RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 CCDC173Q0VFZ6 552 aa12.48□□□□□ -0.41
LIG1-220ENST00000601091 PLEKHF1Q96S99 279 aa12.48□□□□□ -0.41
LIG1-220ENST00000601091 ARAP3Q8WWN8 1544 aa12.48□□□□□ -0.41
LIG1-220ENST00000601091 SHROOM2Q13796 1616 aa12.48□□□□□ -0.41
LIG1-220ENST00000601091 HDGFL1Q5TGJ6 251 aa12.48□□□□□ -0.41
LIG1-220ENST00000601091 ZRANB1Q9UGI0 708 aa12.48□□□□□ -0.41
LIG1-220ENST00000601091 EXOC6BQ9Y2D4 811 aa12.48□□□□□ -0.41
LIG1-220ENST00000601091 CALR3Q96L12 384 aaKnown RBP12.47□□□□□ -0.41
LIG1-220ENST00000601091 IFIT2P09913 472 aaKnown RBP12.47□□□□□ -0.41
LIG1-220ENST00000601091 ZKSCAN1P17029 563 aaPredicted RBP12.47□□□□□ -0.41
LIG1-220ENST00000601091 SSFA2P28290 1259 aa12.47□□□□□ -0.41
LIG1-220ENST00000601091 NBPF20Q3BBV1 942 aa12.47□□□□□ -0.41
LIG1-220ENST00000601091 SRCIN1Q9C0H9 1055 aa12.47□□□□□ -0.41
LIG1-220ENST00000601091 TTC22Q5TAA0 569 aa12.47□□□□□ -0.41
LIG1-220ENST00000601091 R3HCC1Q9Y3T6 440 aaKnown RBP12.47□□□□□ -0.41
LIG1-220ENST00000601091 MAP3K4Q9Y6R4 1608 aa12.47□□□□□ -0.41
LIG1-220ENST00000601091 PSME1Q06323 249 aa12.46□□□□□ -0.41
LIG1-220ENST00000601091 CHAF1AQ13111 956 aaPredicted RBP12.46□□□□□ -0.41
LIG1-220ENST00000601091 ANKRD44Q8N8A2 993 aa12.46□□□□□ -0.41
LIG1-220ENST00000601091 PHF23Q9BUL5 403 aaPredicted RBP12.46□□□□□ -0.41
LIG1-220ENST00000601091 KIF1BO60333 1816 aa12.46□□□□□ -0.41
LIG1-220ENST00000601091 MTERF4Q7Z6M4 381 aaKnown RBP12.46□□□□□ -0.41
LIG1-220ENST00000601091 PPIP5K1Q6PFW1 1433 aa12.46□□□□□ -0.42
LIG1-220ENST00000601091 F6X3S4 739 aa12.46□□□□□ -0.42
LIG1-220ENST00000601091 RNF217Q8TC41 542 aa12.46□□□□□ -0.42
LIG1-220ENST00000601091 CCDC97Q96F63 343 aaPredicted RBP12.46□□□□□ -0.42
LIG1-220ENST00000601091 ANTXR1Q9H6X2 564 aa12.46□□□□□ -0.42
LIG1-220ENST00000601091 DCTPP1Q9H773 170 aa12.46□□□□□ -0.42
LIG1-220ENST00000601091 GAS2L3Q86XJ1 694 aa12.45□□□□□ -0.42
LIG1-220ENST00000601091 NBPF11Q86T75 865 aa12.45□□□□□ -0.42
LIG1-220ENST00000601091 CNTROBQ8N137 903 aa12.45□□□□□ -0.42
LIG1-220ENST00000601091 SMC3Q9UQE7 1217 aa12.45□□□□□ -0.42
LIG1-220ENST00000601091 E9PCH4 1651 aa12.45□□□□□ -0.42
LIG1-220ENST00000601091 SPHKAPQ2M3C7 1700 aa12.45□□□□□ -0.42
LIG1-220ENST00000601091 CLASRPQ8N2M8 674 aaKnown RBP12.45□□□□□ -0.42
LIG1-220ENST00000601091 ERBB4Q15303 1308 aa12.45□□□□□ -0.42
LIG1-220ENST00000601091 CLASP1Q7Z460 1538 aa12.45□□□□□ -0.42
LIG1-220ENST00000601091 CSB-PGBD3P0DP91 1061 aa12.45□□□□□ -0.42
LIG1-220ENST00000601091 IL13P35225 146 aa12.45□□□□□ -0.42
LIG1-220ENST00000601091 CBX1P83916 185 aa12.45□□□□□ -0.42
LIG1-220ENST00000601091 DRC7Q8IY82 874 aa12.45□□□□□ -0.42
LIG1-220ENST00000601091 RNF214Q8ND24 703 aa12.45□□□□□ -0.42
LIG1-220ENST00000601091 GTPBP4Q9BZE4 634 aaKnown RBP12.45□□□□□ -0.42
LIG1-220ENST00000601091 GNAT3A8MTJ3 354 aa12.44□□□□□ -0.42
LIG1-220ENST00000601091 HTATSF1O43719 755 aaKnown RBP12.44□□□□□ -0.42
LIG1-220ENST00000601091 ACEP12821 1306 aa12.44□□□□□ -0.42
LIG1-220ENST00000601091 TTC21BQ7Z4L5 1316 aa12.44□□□□□ -0.42
LIG1-220ENST00000601091 HSP90AB2PQ58FF8 381 aa12.44□□□□□ -0.42
LIG1-220ENST00000601091 RIMS2Q9UQ26 1411 aa12.44□□□□□ -0.42
LIG1-220ENST00000601091 EFCAB6Q5THR3 1501 aa12.44□□□□□ -0.42
LIG1-220ENST00000601091 DDX58O95786 925 aaKnown RBP12.44□□□□□ -0.42
LIG1-220ENST00000601091 IRX5P78411 483 aaPredicted RBP12.44□□□□□ -0.42
LIG1-220ENST00000601091 MEIS3Q99687 375 aa12.44□□□□□ -0.42
LIG1-220ENST00000601091 BAG4O95429 457 aaKnown RBP12.43□□□□□ -0.42
LIG1-220ENST00000601091 SDSP20132 328 aa12.43□□□□□ -0.42
LIG1-220ENST00000601091 MX1P20591 662 aa12.43□□□□□ -0.42
LIG1-220ENST00000601091 NEXNQ0ZGT2 675 aa12.43□□□□□ -0.42
LIG1-220ENST00000601091 G3BP1Q13283 466 aaKnown RBP eCLIP12.43□□□□□ -0.424e-6■■■■□ 21.1
LIG1-220ENST00000601091 EIF4A2Q14240 407 aaKnown RBP12.43□□□□□ -0.42
LIG1-220ENST00000601091 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.43□□□□□ -0.42
LIG1-220ENST00000601091 MLH3Q9UHC1 1453 aa12.43□□□□□ -0.42
LIG1-220ENST00000601091 TDO2P48775 406 aa12.43□□□□□ -0.42
LIG1-220ENST00000601091 THEMISQ8N1K5 641 aaPredicted RBP12.43□□□□□ -0.42
LIG1-220ENST00000601091 PLEKHM2Q8IWE5 1019 aa12.43□□□□□ -0.42
LIG1-220ENST00000601091 C16orf71Q8IYS4 520 aaPredicted RBP12.43□□□□□ -0.42
LIG1-220ENST00000601091 IL1RAPL2Q9NP60 686 aa12.43□□□□□ -0.42
LIG1-220ENST00000601091 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.43□□□□□ -0.42
LIG1-220ENST00000601091 CREBRFQ8IUR6 639 aa12.42□□□□□ -0.42
LIG1-220ENST00000601091 CEP120Q8N960 986 aa12.42□□□□□ -0.42
LIG1-220ENST00000601091 RAB3GAP1Q15042 981 aa12.42□□□□□ -0.42
LIG1-220ENST00000601091 RINLQ6ZS11 566 aa12.42□□□□□ -0.42
LIG1-220ENST00000601091 CHAMP1Q96JM3 812 aa12.42□□□□□ -0.42
LIG1-220ENST00000601091 TRERF1Q96PN7 1200 aa12.41□□□□□ -0.42
LIG1-220ENST00000601091 GEMIN8Q9NWZ8 242 aaKnown RBP12.41□□□□□ -0.42
LIG1-220ENST00000601091 SRGAP3O43295 1099 aa12.41□□□□□ -0.42
LIG1-220ENST00000601091 FLIIQ13045 1269 aa12.41□□□□□ -0.42
LIG1-220ENST00000601091 KLHL40Q2TBA0 621 aa12.41□□□□□ -0.42
LIG1-220ENST00000601091 TAF7Q15545 349 aaPredicted RBP12.41□□□□□ -0.42
LIG1-220ENST00000601091 KRT24Q2M2I5 525 aa12.41□□□□□ -0.42
LIG1-220ENST00000601091 RNF20Q5VTR2 975 aa12.41□□□□□ -0.42
LIG1-220ENST00000601091 CHMP3Q9Y3E7 222 aa12.41□□□□□ -0.42
LIG1-220ENST00000601091 NCKAP5LQ9HCH0 1330 aa12.4□□□□□ -0.42
LIG1-220ENST00000601091 GOLGA6L6A8MZA4 724 aa12.4□□□□□ -0.42
LIG1-220ENST00000601091 GTF2A1P52655 376 aaPredicted RBP12.4□□□□□ -0.42
LIG1-220ENST00000601091 XPCQ01831 940 aaPredicted RBP12.4□□□□□ -0.42
LIG1-220ENST00000601091 WDR33Q9C0J8 1336 aaKnown RBP12.4□□□□□ -0.42
LIG1-220ENST00000601091 PLEKHO1Q53GL0 409 aaPredicted RBP12.4□□□□□ -0.42
LIG1-220ENST00000601091 CEP85Q6P2H3 762 aa12.4□□□□□ -0.42
LIG1-220ENST00000601091 SGSM3Q96HU1 749 aa12.4□□□□□ -0.42
LIG1-220ENST00000601091 EDC4Q6P2E9 1401 aaKnown RBP12.4□□□□□ -0.42
LIG1-220ENST00000601091 VPS37CA5D8V6 355 aaPredicted RBP12.4□□□□□ -0.42
LIG1-220ENST00000601091 AMOTL2Q9Y2J4 779 aa12.4□□□□□ -0.42
LIG1-220ENST00000601091 NEO1Q92859 1461 aa12.4□□□□□ -0.42
LIG1-220ENST00000601091 RNF17Q9BXT8 1623 aaKnown RBP12.39□□□□□ -0.43
LIG1-220ENST00000601091 DHX16O60231 1041 aaKnown RBP12.39□□□□□ -0.43
LIG1-220ENST00000601091 SATB1Q01826 763 aa12.39□□□□□ -0.43
LIG1-220ENST00000601091 CCDC39Q9UFE4 941 aa12.39□□□□□ -0.43
LIG1-220ENST00000601091 UPF3BQ9BZI7 483 aaKnown RBP12.39□□□□□ -0.43
LIG1-220ENST00000601091 PDE1AP54750 535 aa12.38□□□□□ -0.43
LIG1-220ENST00000601091 BRPF1P55201 1214 aaPredicted RBP12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms