RNA–Protein interactions for RNA: ENST00000589351.5

DNMT1-220, Transcript of DNA methyltransferase 1, humanhuman

TSL 2

Gene DNMT1, Length 672 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-220ENST00000589351 DUOX2Q9NRD8 1548 aa8.64□□□□□ -1.03
DNMT1-220ENST00000589351 ERVK-7P63135 1459 aa8.64□□□□□ -1.03
DNMT1-220ENST00000589351 VPS8Q8N3P4 1428 aa8.64□□□□□ -1.03
DNMT1-220ENST00000589351 MS4A1P11836 297 aa8.64□□□□□ -1.03
DNMT1-220ENST00000589351 NNTQ13423 1086 aa8.64□□□□□ -1.03
DNMT1-220ENST00000589351 SCARF1Q14162 830 aa8.64□□□□□ -1.03
DNMT1-220ENST00000589351 RRP7BPQ9NSQ0 103 aa8.64□□□□□ -1.03
DNMT1-220ENST00000589351 PCDHGC3Q9UN70 934 aa8.64□□□□□ -1.03
DNMT1-220ENST00000589351 CFAP65Q6ZU64 1925 aaKnown RBP8.64□□□□□ -1.03
DNMT1-220ENST00000589351 SCAF11Q99590 1463 aaKnown RBP8.64□□□□□ -1.03
DNMT1-220ENST00000589351 LTKP29376 864 aa8.63□□□□□ -1.03
DNMT1-220ENST00000589351 UNC93B1Q9H1C4 597 aa8.63□□□□□ -1.03
DNMT1-220ENST00000589351 SYNMO15061 1565 aa8.63□□□□□ -1.03
DNMT1-220ENST00000589351 MAP3K1Q13233 1512 aa8.63□□□□□ -1.03
DNMT1-220ENST00000589351 ARHGAP31Q2M1Z3 1444 aa8.63□□□□□ -1.03
DNMT1-220ENST00000589351 C6orf229H3BNL8 230 aa8.62□□□□□ -1.03
DNMT1-220ENST00000589351 FDX1P10109 184 aa8.62□□□□□ -1.03
DNMT1-220ENST00000589351 TIMP2P16035 220 aa8.62□□□□□ -1.03
DNMT1-220ENST00000589351 GSK3AP49840 483 aa8.62□□□□□ -1.03
DNMT1-220ENST00000589351 KANK4Q5T7N3 995 aaPredicted RBP8.62□□□□□ -1.03
DNMT1-220ENST00000589351 PROSER2Q86WR7 435 aaPredicted RBP8.62□□□□□ -1.03
DNMT1-220ENST00000589351 KCTD17Q8N5Z5 321 aa8.62□□□□□ -1.03
DNMT1-220ENST00000589351 FAM217BQ9NTX9 383 aaPredicted RBP8.62□□□□□ -1.03
DNMT1-220ENST00000589351 EVA1BQ9NVM1 165 aa8.62□□□□□ -1.03
DNMT1-220ENST00000589351 KIF15Q9NS87 1388 aa8.61□□□□□ -1.03
DNMT1-220ENST00000589351 UBR1Q8IWV7 1749 aa8.61□□□□□ -1.03
DNMT1-220ENST00000589351 PLEKHG3A1L390 1219 aa8.61□□□□□ -1.03
DNMT1-220ENST00000589351 WDR4P57081 412 aaKnown RBP8.61□□□□□ -1.03
DNMT1-220ENST00000589351 KCNMA1Q12791 1236 aa8.61□□□□□ -1.03
DNMT1-220ENST00000589351 NUTM1Q86Y26 1132 aa8.61□□□□□ -1.03
DNMT1-220ENST00000589351 MPNDQ8N594 471 aa8.61□□□□□ -1.03
DNMT1-220ENST00000589351 ERBINQ96RT1 1412 aa8.61□□□□□ -1.03
DNMT1-220ENST00000589351 CEP152O94986 1710 aa8.6□□□□□ -1.03
DNMT1-220ENST00000589351 SLIT1O75093 1534 aa8.6□□□□□ -1.03
DNMT1-220ENST00000589351 ARHGAP23Q9P227 1491 aa8.6□□□□□ -1.03
DNMT1-220ENST00000589351 LOC105371045A0A1W2PR82 267 aa8.6□□□□□ -1.03
DNMT1-220ENST00000589351 KCNA6P17658 529 aa8.6□□□□□ -1.03
DNMT1-220ENST00000589351 VARSP26640 1264 aaKnown RBP8.6□□□□□ -1.03
DNMT1-220ENST00000589351 PTPRNQ16849 979 aa8.6□□□□□ -1.03
DNMT1-220ENST00000589351 ZNF511Q8NB15 262 aa8.6□□□□□ -1.03
DNMT1-220ENST00000589351 KLF16Q9BXK1 252 aaPredicted RBP8.6□□□□□ -1.03
DNMT1-220ENST00000589351 GPCPD1Q9NPB8 672 aa8.6□□□□□ -1.03
DNMT1-220ENST00000589351 SLC52A1Q9NWF4 448 aa8.6□□□□□ -1.03
DNMT1-220ENST00000589351 FAM135BQ49AJ0 1406 aa8.6□□□□□ -1.03
DNMT1-220ENST00000589351 ANKRD30AQ9BXX3 1397 aa8.6□□□□□ -1.03
DNMT1-220ENST00000589351 TMEM2Q9UHN6 1383 aa8.6□□□□□ -1.03
DNMT1-220ENST00000589351 MINK1Q8N4C8 1332 aaPredicted RBP8.59□□□□□ -1.03
DNMT1-220ENST00000589351 ADH1CP00326 375 aa8.59□□□□□ -1.03
DNMT1-220ENST00000589351 KCNH2Q12809 1159 aa8.59□□□□□ -1.03
DNMT1-220ENST00000589351 IDI1Q13907 227 aa8.59□□□□□ -1.03
DNMT1-220ENST00000589351 STRCP1A6NGW2 1772 aa8.58□□□□□ -1.04
DNMT1-220ENST00000589351 VSIG10Q8N0Z9 540 aa8.58□□□□□ -1.04
DNMT1-220ENST00000589351 CCDC102AQ96A19 550 aa8.58□□□□□ -1.04
DNMT1-220ENST00000589351 SLC26A8Q96RN1 970 aa8.58□□□□□ -1.04
DNMT1-220ENST00000589351 CHIC2Q9UKJ5 165 aa8.58□□□□□ -1.04
DNMT1-220ENST00000589351 MROH1Q8NDA8 1641 aa8.58□□□□□ -1.04
DNMT1-220ENST00000589351 ALKQ9UM73 1620 aa8.58□□□□□ -1.04
DNMT1-220ENST00000589351 CLCN1P35523 988 aa8.57□□□□□ -1.04
DNMT1-220ENST00000589351 HOMEZQ8IX15 550 aa8.57□□□□□ -1.04
DNMT1-220ENST00000589351 PRDM15P57071 1507 aaPredicted RBP8.57□□□□□ -1.04
DNMT1-220ENST00000589351 TMEM94Q12767 1356 aa8.57□□□□□ -1.04
DNMT1-220ENST00000589351 ABCC5O15440 1437 aa8.56□□□□□ -1.04
DNMT1-220ENST00000589351 EFCAB6Q5THR3 1501 aa8.56□□□□□ -1.04
DNMT1-220ENST00000589351 PIK3C2BO00750 1634 aa8.56□□□□□ -1.04
DNMT1-220ENST00000589351 PPFIA3O75145 1194 aa8.56□□□□□ -1.04
DNMT1-220ENST00000589351 PPP1R15AO75807 674 aaPredicted RBP8.56□□□□□ -1.04
DNMT1-220ENST00000589351 MSH6P52701 1360 aa8.56□□□□□ -1.04
DNMT1-220ENST00000589351 KDM5AP29375 1690 aaKnown RBP8.56□□□□□ -1.04
DNMT1-220ENST00000589351 DAPK1P53355 1430 aa8.55□□□□□ -1.04
DNMT1-220ENST00000589351 PTPN23Q9H3S7 1636 aa8.55□□□□□ -1.04
DNMT1-220ENST00000589351 MAN1A2O60476 641 aa8.55□□□□□ -1.04
DNMT1-220ENST00000589351 NDUFV2P19404 249 aa8.55□□□□□ -1.04
DNMT1-220ENST00000589351 C6orf118Q5T5N4 469 aa8.55□□□□□ -1.04
DNMT1-220ENST00000589351 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.55□□□□□ -1.04
DNMT1-220ENST00000589351 ZFAND3Q9H8U3 227 aa8.55□□□□□ -1.04
DNMT1-220ENST00000589351 SLAIN2Q9P270 581 aa8.55□□□□□ -1.04
DNMT1-220ENST00000589351 RGS17Q9UGC6 210 aaPredicted RBP8.55□□□□□ -1.04
DNMT1-220ENST00000589351 FAM50AQ14320 339 aaKnown RBP8.54□□□□□ -1.04
DNMT1-220ENST00000589351 C14orf37Q86TY3 774 aa8.54□□□□□ -1.04
DNMT1-220ENST00000589351 PRR7Q8TB68 274 aa8.54□□□□□ -1.04
DNMT1-220ENST00000589351 GTF3C3Q9Y5Q9 886 aa8.54□□□□□ -1.04
DNMT1-220ENST00000589351 LMTK2Q8IWU2 1503 aa8.54□□□□□ -1.04
DNMT1-220ENST00000589351 FGD6Q6ZV73 1430 aa8.54□□□□□ -1.04
DNMT1-220ENST00000589351 ZIC2O95409 532 aaPredicted RBP8.53□□□□□ -1.04
DNMT1-220ENST00000589351 TMEM151AQ8N4L1 468 aa8.53□□□□□ -1.04
DNMT1-220ENST00000589351 SPIRE2Q8WWL2 714 aa8.53□□□□□ -1.04
DNMT1-220ENST00000589351 TBX22Q9Y458 520 aa8.53□□□□□ -1.04
DNMT1-220ENST00000589351 CROCC2H7BZ55 1655 aa8.53□□□□□ -1.04
DNMT1-220ENST00000589351 XIRP1Q702N8 1843 aaKnown RBP8.52□□□□□ -1.04
DNMT1-220ENST00000589351 NKTRP30414 1462 aaKnown RBP8.52□□□□□ -1.05
DNMT1-220ENST00000589351 JCADQ9P266 1359 aa8.52□□□□□ -1.05
DNMT1-220ENST00000589351 ATF3P18847 181 aa8.52□□□□□ -1.05
DNMT1-220ENST00000589351 POTEAQ6S8J7 498 aa8.52□□□□□ -1.05
DNMT1-220ENST00000589351 FAM174AQ8TBP5 190 aa8.52□□□□□ -1.05
DNMT1-220ENST00000589351 ITPKCQ96DU7 683 aa8.52□□□□□ -1.05
DNMT1-220ENST00000589351 CDK15Q96Q40 435 aa8.52□□□□□ -1.05
DNMT1-220ENST00000589351 NOS1P29475 1434 aa8.52□□□□□ -1.05
DNMT1-220ENST00000589351 TET3O43151 1660 aa8.52□□□□□ -1.05
DNMT1-220ENST00000589351 ROBO1Q9Y6N7 1651 aa8.51□□□□□ -1.05
DNMT1-220ENST00000589351 MOXD2PA6NHM9 499 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms