RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 AKNAQ7Z591 1439 aa6.73□□□□□ -1.33
SPG11-211ENST00000558561 SKIP12755 728 aa6.72□□□□□ -1.33
SPG11-211ENST00000558561 SEPT12Q8IYM1 358 aa6.72□□□□□ -1.33
SPG11-211ENST00000558561 CCDC82Q8N4S0 544 aa6.72□□□□□ -1.33
SPG11-211ENST00000558561 KLF16Q9BXK1 252 aaPredicted RBP6.72□□□□□ -1.33
SPG11-211ENST00000558561 PPP1R12CQ9BZL4 782 aa6.72□□□□□ -1.33
SPG11-211ENST00000558561 CHIC2Q9UKJ5 165 aa6.72□□□□□ -1.33
SPG11-211ENST00000558561 PCDHB11Q9Y5F2 797 aa6.72□□□□□ -1.33
SPG11-211ENST00000558561 PLCH2O75038 1416 aa6.72□□□□□ -1.33
SPG11-211ENST00000558561 TROQ12816 1431 aaPredicted RBP6.72□□□□□ -1.33
SPG11-211ENST00000558561 HECW1Q76N89 1606 aa6.72□□□□□ -1.33
SPG11-211ENST00000558561 CDC42BPBQ9Y5S2 1711 aa6.71□□□□□ -1.34
SPG11-211ENST00000558561 SCAPERQ9BY12 1400 aa6.71□□□□□ -1.34
SPG11-211ENST00000558561 PALM3A6NDB9 673 aaPredicted RBP6.71□□□□□ -1.34
SPG11-211ENST00000558561 NRG2O14511 850 aaPredicted RBP6.71□□□□□ -1.34
SPG11-211ENST00000558561 EFCAB2Q5VUJ9 269 aa6.71□□□□□ -1.34
SPG11-211ENST00000558561 DEPDC4Q8N2C3 294 aa6.71□□□□□ -1.34
SPG11-211ENST00000558561 PLPP7Q8NBV4 271 aa6.71□□□□□ -1.34
SPG11-211ENST00000558561 IRX2Q9BZI1 471 aaPredicted RBP6.71□□□□□ -1.34
SPG11-211ENST00000558561 CDK11AQ9UQ88 783 aaPredicted RBP6.71□□□□□ -1.34
SPG11-211ENST00000558561 TEX14Q8IWB6 1497 aa6.71□□□□□ -1.34
SPG11-211ENST00000558561 ARAP3Q8WWN8 1544 aa6.71□□□□□ -1.34
SPG11-211ENST00000558561 ARHGEF12Q9NZN5 1544 aa6.71□□□□□ -1.34
SPG11-211ENST00000558561 YEATS2Q9ULM3 1422 aa6.7□□□□□ -1.34
SPG11-211ENST00000558561 ATP9BO43861 1147 aa6.7□□□□□ -1.34
SPG11-211ENST00000558561 SCTRP47872 440 aa6.7□□□□□ -1.34
SPG11-211ENST00000558561 WDR4P57081 412 aaKnown RBP6.7□□□□□ -1.34
SPG11-211ENST00000558561 DHX9Q08211 1270 aaKnown RBP6.7□□□□□ -1.34
SPG11-211ENST00000558561 MLECQ14165 292 aa6.7□□□□□ -1.34
SPG11-211ENST00000558561 ZNF784Q8NCA9 323 aaPredicted RBP6.7□□□□□ -1.34
SPG11-211ENST00000558561 NFATC2IPQ8NCF5 419 aa6.7□□□□□ -1.34
SPG11-211ENST00000558561 ITPKCQ96DU7 683 aa6.7□□□□□ -1.34
SPG11-211ENST00000558561 CCDC97Q96F63 343 aaPredicted RBP6.7□□□□□ -1.34
SPG11-211ENST00000558561 ARID3AQ99856 593 aa6.7□□□□□ -1.34
SPG11-211ENST00000558561 ZFAND3Q9H8U3 227 aa6.7□□□□□ -1.34
SPG11-211ENST00000558561 CYLDQ9NQC7 956 aa6.7□□□□□ -1.34
SPG11-211ENST00000558561 DOLKQ9UPQ8 538 aa6.7□□□□□ -1.34
SPG11-211ENST00000558561 EMILIN1Q9Y6C2 1016 aa6.7□□□□□ -1.34
SPG11-211ENST00000558561 FANCAO15360 1455 aa6.7□□□□□ -1.34
SPG11-211ENST00000558561 SIGLEC1Q9BZZ2 1709 aa6.7□□□□□ -1.34
SPG11-211ENST00000558561 FRMPD1Q5SYB0 1578 aa6.69□□□□□ -1.34
SPG11-211ENST00000558561 USP17L5A8MUK1 530 aa6.69□□□□□ -1.34
SPG11-211ENST00000558561 LILRA1O75019 489 aa6.69□□□□□ -1.34
SPG11-211ENST00000558561 ZIC2O95409 532 aaPredicted RBP6.69□□□□□ -1.34
SPG11-211ENST00000558561 TIMP2P16035 220 aa6.69□□□□□ -1.34
SPG11-211ENST00000558561 RFX1P22670 979 aa6.69□□□□□ -1.34
SPG11-211ENST00000558561 PKDCCQ504Y2 493 aa6.69□□□□□ -1.34
SPG11-211ENST00000558561 OXLD1Q5BKU9 147 aa6.69□□□□□ -1.34
SPG11-211ENST00000558561 CFAP70Q5T0N1 1121 aa6.69□□□□□ -1.34
SPG11-211ENST00000558561 TRAF7Q6Q0C0 670 aa6.69□□□□□ -1.34
SPG11-211ENST00000558561 SERPINA10Q9UK55 444 aa6.69□□□□□ -1.34
SPG11-211ENST00000558561 MAFBQ9Y5Q3 323 aaPredicted RBP6.69□□□□□ -1.34
SPG11-211ENST00000558561 TRAPPC8Q9Y2L5 1435 aa6.68□□□□□ -1.34
SPG11-211ENST00000558561 GPATCH8Q9UKJ3 1502 aaKnown RBP6.68□□□□□ -1.34
SPG11-211ENST00000558561 DGAT1O75907 488 aa6.68□□□□□ -1.34
SPG11-211ENST00000558561 LMOD1P29536 600 aaPredicted RBP6.68□□□□□ -1.34
SPG11-211ENST00000558561 ADD1P35611 737 aaKnown RBP6.68□□□□□ -1.34
SPG11-211ENST00000558561 CBLBQ13191 982 aa6.68□□□□□ -1.34
SPG11-211ENST00000558561 LAPTM4AQ15012 233 aa6.68□□□□□ -1.34
SPG11-211ENST00000558561 MAP7D1Q3KQU3 841 aa6.68□□□□□ -1.34
SPG11-211ENST00000558561 CCDC125Q86Z20 511 aa6.68□□□□□ -1.34
SPG11-211ENST00000558561 PGPEP1Q9NXJ5 209 aa6.68□□□□□ -1.34
SPG11-211ENST00000558561 CDC42BPAQ5VT25 1732 aa6.67□□□□□ -1.34
SPG11-211ENST00000558561 RICTORQ6R327 1708 aa6.67□□□□□ -1.34
SPG11-211ENST00000558561 DENND4BO75064 1496 aaPredicted RBP6.67□□□□□ -1.34
SPG11-211ENST00000558561 ADGRL1O94910 1474 aa6.67□□□□□ -1.34
SPG11-211ENST00000558561 NEO1Q92859 1461 aa6.67□□□□□ -1.34
SPG11-211ENST00000558561 USP17L3A6NCW0 530 aa6.67□□□□□ -1.34
SPG11-211ENST00000558561 USP17L4A6NCW7 530 aa6.67□□□□□ -1.34
SPG11-211ENST00000558561 AVPP01185 164 aa6.67□□□□□ -1.34
SPG11-211ENST00000558561 MYT1Q01538 1121 aa6.67□□□□□ -1.34
SPG11-211ENST00000558561 NCOA4Q13772 614 aa6.67□□□□□ -1.34
SPG11-211ENST00000558561 USP17L2Q6R6M4 530 aa6.67□□□□□ -1.34
SPG11-211ENST00000558561 USP17L1Q7RTZ2 530 aa6.67□□□□□ -1.34
SPG11-211ENST00000558561 ARID4BQ4LE39 1312 aaPredicted RBP6.67□□□□□ -1.34
SPG11-211ENST00000558561 FYCO1Q9BQS8 1478 aa6.66□□□□□ -1.34
SPG11-211ENST00000558561 CAPN5O15484 640 aaPredicted RBP6.66□□□□□ -1.34
SPG11-211ENST00000558561 CEBPAP49715 358 aaPredicted RBP6.66□□□□□ -1.34
SPG11-211ENST00000558561 ERVK-9P63128 1117 aa6.66□□□□□ -1.34
SPG11-211ENST00000558561 USP4Q13107 963 aa6.66□□□□□ -1.34
SPG11-211ENST00000558561 CDCA8Q53HL2 280 aa6.66□□□□□ -1.34
SPG11-211ENST00000558561 CFDP1Q9UEE9 299 aaPredicted RBP6.66□□□□□ -1.34
SPG11-211ENST00000558561 MYO5CQ9NQX4 1742 aa6.66□□□□□ -1.34
SPG11-211ENST00000558561 MTUS2Q5JR59 1369 aa6.66□□□□□ -1.34
SPG11-211ENST00000558561 ARHGAP5Q13017 1502 aa6.66□□□□□ -1.34
SPG11-211ENST00000558561 CC2D2BQ6DHV5 1058 aa6.65□□□□□ -1.34
SPG11-211ENST00000558561 PLEKHM2Q8IWE5 1019 aa6.65□□□□□ -1.34
SPG11-211ENST00000558561 AGBL1Q96MI9 1066 aa6.65□□□□□ -1.34
SPG11-211ENST00000558561 PHLDB1Q86UU1 1377 aa6.65□□□□□ -1.35
SPG11-211ENST00000558561 VPS8Q8N3P4 1428 aa6.65□□□□□ -1.35
SPG11-211ENST00000558561 ST8SIA5O15466 376 aa6.64□□□□□ -1.35
SPG11-211ENST00000558561 MYCP01106 439 aaPredicted RBP6.64□□□□□ -1.35
SPG11-211ENST00000558561 EML3Q32P44 896 aa6.64□□□□□ -1.35
SPG11-211ENST00000558561 KDF1Q8NAX2 398 aaPredicted RBP6.64□□□□□ -1.35
SPG11-211ENST00000558561 OSBPL3Q9H4L5 887 aa6.64□□□□□ -1.35
SPG11-211ENST00000558561 ESF1Q9H501 851 aaKnown RBP6.64□□□□□ -1.35
SPG11-211ENST00000558561 MKRN1Q9UHC7 482 aaKnown RBP6.64□□□□□ -1.35
SPG11-211ENST00000558561 CCNB3Q8WWL7 1395 aa6.64□□□□□ -1.35
SPG11-211ENST00000558561 CCDC18Q5T9S5 1454 aa6.64□□□□□ -1.35
SPG11-211ENST00000558561 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms