RNA–Protein interactions for RNA: ENST00000543473.1

SUDS3-204, Transcript of SDS3 homolog, SIN3A corepressor complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SUDS3, Length 4,897 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SUDS3-204ENST00000543473 ZKSCAN5Q9Y2L8 839 aa22.84■■□□□ 1.25
SUDS3-204ENST00000543473 BRPF1P55201 1214 aaPredicted RBP22.84■■□□□ 1.25
SUDS3-204ENST00000543473 AXDND1Q5T1B0 1012 aaPredicted RBP22.84■■□□□ 1.25
SUDS3-204ENST00000543473 TOM1L2Q6ZVM7 507 aa22.84■■□□□ 1.25
SUDS3-204ENST00000543473 SCAND2PQ9GZW5 306 aaPredicted RBP22.83■■□□□ 1.25
SUDS3-204ENST00000543473 RNF123Q5XPI4 1314 aa22.83■■□□□ 1.25
SUDS3-204ENST00000543473 CDR1P51861 262 aa22.83■■□□□ 1.25
SUDS3-204ENST00000543473 SKIDA1Q1XH10 827 aa22.83■■□□□ 1.25
SUDS3-204ENST00000543473 ERLIN1O75477 346 aa22.83■■□□□ 1.25
SUDS3-204ENST00000543473 TMCO3Q6UWJ1 677 aa22.83■■□□□ 1.25
SUDS3-204ENST00000543473 CGNQ9P2M7 1197 aaKnown RBP22.83■■□□□ 1.25
SUDS3-204ENST00000543473 UVSSAQ2YD98 709 aa22.83■■□□□ 1.24
SUDS3-204ENST00000543473 TEX14Q8IWB6 1497 aa22.82■■□□□ 1.24
SUDS3-204ENST00000543473 SPDYE4A6NLX3 237 aa22.82■■□□□ 1.24
SUDS3-204ENST00000543473 CBFA2T2O43439 604 aa22.82■■□□□ 1.24
SUDS3-204ENST00000543473 OFD1O75665 1012 aa22.82■■□□□ 1.24
SUDS3-204ENST00000543473 EIF3JO75822 258 aaKnown RBP22.82■■□□□ 1.24
SUDS3-204ENST00000543473 MAPK8IP2Q13387 824 aaPredicted RBP22.81■■□□□ 1.24
SUDS3-204ENST00000543473 AACSQ86V21 672 aa22.81■■□□□ 1.24
SUDS3-204ENST00000543473 TNRQ92752 1358 aa22.81■■□□□ 1.24
SUDS3-204ENST00000543473 CLIP2Q9UDT6 1046 aa22.81■■□□□ 1.24
SUDS3-204ENST00000543473 EMILIN1Q9Y6C2 1016 aa22.81■■□□□ 1.24
SUDS3-204ENST00000543473 SFPQP23246 707 aaKnown RBP eCLIP22.8■■□□□ 1.24
SUDS3-204ENST00000543473 LIMCH1Q9UPQ0 1083 aa22.8■■□□□ 1.24
SUDS3-204ENST00000543473 ABCC10Q5T3U5 1492 aa22.8■■□□□ 1.24
SUDS3-204ENST00000543473 RAB3GAP1Q15042 981 aa22.8■■□□□ 1.24
SUDS3-204ENST00000543473 SIL1Q9H173 461 aa22.8■■□□□ 1.24
SUDS3-204ENST00000543473 FOXO3O43524 673 aa22.8■■□□□ 1.24
SUDS3-204ENST00000543473 HCLS1P14317 486 aaPredicted RBP22.8■■□□□ 1.24
SUDS3-204ENST00000543473 SMC5Q8IY18 1101 aa22.8■■□□□ 1.24
SUDS3-204ENST00000543473 CKAP2LQ8IYA6 745 aa22.8■■□□□ 1.24
SUDS3-204ENST00000543473 XBP1P17861 261 aa22.79■■□□□ 1.24
SUDS3-204ENST00000543473 VPS53Q5VIR6 699 aa22.79■■□□□ 1.24
SUDS3-204ENST00000543473 PPFIBP1Q86W92 1011 aa22.79■■□□□ 1.24
SUDS3-204ENST00000543473 DCTN1Q14203 1278 aa22.79■■□□□ 1.24
SUDS3-204ENST00000543473 PHF8Q9UPP1 1060 aa22.79■■□□□ 1.24
SUDS3-204ENST00000543473 KRT32Q14532 448 aa22.79■■□□□ 1.24
SUDS3-204ENST00000543473 DDX11Q96FC9 970 aa22.79■■□□□ 1.24
SUDS3-204ENST00000543473 RBM42Q9BTD8 480 aaKnown RBP22.79■■□□□ 1.24
SUDS3-204ENST00000543473 SH2B1Q9NRF2 756 aaPredicted RBP22.79■■□□□ 1.24
SUDS3-204ENST00000543473 PRPF40BQ6NWY9 871 aaKnown RBP22.79■■□□□ 1.24
SUDS3-204ENST00000543473 DDX54Q8TDD1 881 aaKnown RBP22.79■■□□□ 1.24
SUDS3-204ENST00000543473 TTC22Q5TAA0 569 aa22.78■■□□□ 1.24
SUDS3-204ENST00000543473 NOLC1Q14978 699 aaKnown RBP eCLIP22.78■■□□□ 1.24
SUDS3-204ENST00000543473 HS1BP3Q53T59 392 aa22.78■■□□□ 1.24
SUDS3-204ENST00000543473 PRIM1P49642 420 aaKnown RBP22.78■■□□□ 1.24
SUDS3-204ENST00000543473 RDXP35241 583 aaKnown RBP22.77■■□□□ 1.24
SUDS3-204ENST00000543473 KIF1BPQ96EK5 621 aa22.77■■□□□ 1.24
SUDS3-204ENST00000543473 ZNF830Q96NB3 372 aaPredicted RBP22.77■■□□□ 1.24
SUDS3-204ENST00000543473 KCNH5Q8NCM2 988 aa22.77■■□□□ 1.24
SUDS3-204ENST00000543473 BRMS1Q9HCU9 246 aa22.77■■□□□ 1.24
SUDS3-204ENST00000543473 SMTNL1A8MU46 457 aa22.77■■□□□ 1.24
SUDS3-204ENST00000543473 GLRX3O76003 335 aaKnown RBP22.77■■□□□ 1.24
SUDS3-204ENST00000543473 RALGAPBQ86X10 1494 aa22.77■■□□□ 1.23
SUDS3-204ENST00000543473 CALCOCO1Q9P1Z2 691 aa22.76■■□□□ 1.23
SUDS3-204ENST00000543473 STX6O43752 255 aa22.76■■□□□ 1.23
SUDS3-204ENST00000543473 TMX3Q96JJ7 454 aa22.76■■□□□ 1.23
SUDS3-204ENST00000543473 TSPYL1Q9H0U9 437 aa22.76■■□□□ 1.23
SUDS3-204ENST00000543473 SHANK2Q9UPX8 1470 aa22.75■■□□□ 1.23
SUDS3-204ENST00000543473 RLBP1P12271 317 aa22.75■■□□□ 1.23
SUDS3-204ENST00000543473 UBE2HP62256 183 aa22.75■■□□□ 1.23
SUDS3-204ENST00000543473 ANO10Q9NW15 660 aa22.75■■□□□ 1.23
SUDS3-204ENST00000543473 CFAP100Q494V2 611 aa22.75■■□□□ 1.23
SUDS3-204ENST00000543473 DACH1Q9UI36 760 aa22.75■■□□□ 1.23
SUDS3-204ENST00000543473 SPG7Q9UQ90 795 aa22.75■■□□□ 1.23
SUDS3-204ENST00000543473 TNNQ9UQP3 1299 aa22.75■■□□□ 1.23
SUDS3-204ENST00000543473 PRAG1Q86YV5 1406 aa22.75■■□□□ 1.23
SUDS3-204ENST00000543473 TRMT1Q9NXH9 659 aaKnown RBP22.75■■□□□ 1.23
SUDS3-204ENST00000543473 MIS18AQ9NYP9 233 aa22.74■■□□□ 1.23
SUDS3-204ENST00000543473 NUTM2BA6NNL0 878 aaPredicted RBP22.74■■□□□ 1.23
SUDS3-204ENST00000543473 NUTM2EB1AL46 878 aaPredicted RBP22.74■■□□□ 1.23
SUDS3-204ENST00000543473 MCM10Q7L590 875 aa22.74■■□□□ 1.23
SUDS3-204ENST00000543473 NUTM2AQ8IVF1 878 aaPredicted RBP22.74■■□□□ 1.23
SUDS3-204ENST00000543473 LARP6Q9BRS8 491 aaKnown RBP22.74■■□□□ 1.23
SUDS3-204ENST00000543473 KDM2BQ8NHM5 1336 aa22.74■■□□□ 1.23
SUDS3-204ENST00000543473 CABP4P57796 275 aa22.74■■□□□ 1.23
SUDS3-204ENST00000543473 SART3Q15020 963 aaKnown RBP22.74■■□□□ 1.23
SUDS3-204ENST00000543473 TARBP1Q13395 1621 aaKnown RBP22.73■■□□□ 1.23
SUDS3-204ENST00000543473 CEP170Q5SW79 1584 aa22.73■■□□□ 1.23
SUDS3-204ENST00000543473 RAB11FIP3O75154 756 aa22.73■■□□□ 1.23
SUDS3-204ENST00000543473 PIP4K2AP48426 406 aaPredicted RBP22.73■■□□□ 1.23
SUDS3-204ENST00000543473 DDX19AQ9NUU7 478 aaKnown RBP22.73■■□□□ 1.23
SUDS3-204ENST00000543473 NEMFO60524 1076 aa22.73■■□□□ 1.23
SUDS3-204ENST00000543473 URI1O94763 535 aaPredicted RBP22.72■■□□□ 1.23
SUDS3-204ENST00000543473 SAMD9Q5K651 1589 aa22.72■■□□□ 1.23
SUDS3-204ENST00000543473 F6X3S4 739 aa22.72■■□□□ 1.23
SUDS3-204ENST00000543473 CCDC102AQ96A19 550 aa22.72■■□□□ 1.23
SUDS3-204ENST00000543473 IL16Q14005 1332 aa22.72■■□□□ 1.23
SUDS3-204ENST00000543473 UHRF1BP1LA0JNW5 1464 aa22.72■■□□□ 1.23
SUDS3-204ENST00000543473 ZNF165P49910 485 aa22.71■■□□□ 1.23
SUDS3-204ENST00000543473 GIMAP6Q6P9H5 292 aa22.71■■□□□ 1.23
SUDS3-204ENST00000543473 SDSP20132 328 aa22.71■■□□□ 1.23
SUDS3-204ENST00000543473 TTC12Q9H892 705 aaPredicted RBP22.7■■□□□ 1.23
SUDS3-204ENST00000543473 TFIP11Q9UBB9 837 aaKnown RBP22.7■■□□□ 1.22
SUDS3-204ENST00000543473 TRERF1Q96PN7 1200 aa22.69■■□□□ 1.22
SUDS3-204ENST00000543473 AMOTL1Q8IY63 956 aa22.69■■□□□ 1.22
SUDS3-204ENST00000543473 ZNHIT6Q9NWK9 470 aaKnown RBP22.69■■□□□ 1.22
SUDS3-204ENST00000543473 TBC1D2BQ9UPU7 963 aa22.69■■□□□ 1.22
SUDS3-204ENST00000543473 GNAT3A8MTJ3 354 aa22.69■■□□□ 1.22
SUDS3-204ENST00000543473 POLR3GO15318 223 aaPredicted RBP22.68■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 173.8 ms