Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.38■□□□□ 0.53
LSM1O15116 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
LSM1O15116 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LSM1O15116 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
LSM1O15116 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
LSM1O15116 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC18.38■□□□□ 0.53
LSM1O15116 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
LSM1O15116 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LSM1O15116 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LSM1O15116 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LSM1O15116 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
LSM1O15116 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.37■□□□□ 0.53
LSM1O15116 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LSM1O15116 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LSM1O15116 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LSM1O15116 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
LSM1O15116 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
LSM1O15116 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LSM1O15116 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LSM1O15116 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC18.37■□□□□ 0.53
LSM1O15116 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.37■□□□□ 0.53
LSM1O15116 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LSM1O15116 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
LSM1O15116 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC18.37■□□□□ 0.53
LSM1O15116 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
LSM1O15116 RGMA-211ENST00000557420 989 ntTSL 3 BASIC18.37■□□□□ 0.53
LSM1O15116 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
LSM1O15116 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LSM1O15116 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
LSM1O15116 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC18.37■□□□□ 0.53
LSM1O15116 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LSM1O15116 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
LSM1O15116 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LSM1O15116 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.37■□□□□ 0.53
LSM1O15116 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LSM1O15116 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.36■□□□□ 0.53
LSM1O15116 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LSM1O15116 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
LSM1O15116 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LSM1O15116 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LSM1O15116 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LSM1O15116 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LSM1O15116 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LSM1O15116 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LSM1O15116 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
LSM1O15116 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LSM1O15116 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC18.36■□□□□ 0.53
LSM1O15116 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.36■□□□□ 0.53
LSM1O15116 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
LSM1O15116 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC18.36■□□□□ 0.53
LSM1O15116 UNC93B5-201ENST00000530315 699 ntBASIC18.36■□□□□ 0.53
LSM1O15116 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.36■□□□□ 0.53
LSM1O15116 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
LSM1O15116 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
LSM1O15116 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
LSM1O15116 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
LSM1O15116 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
LSM1O15116 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LSM1O15116 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LSM1O15116 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LSM1O15116 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LSM1O15116 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC18.35■□□□□ 0.53
LSM1O15116 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LSM1O15116 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
LSM1O15116 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
LSM1O15116 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LSM1O15116 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LSM1O15116 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LSM1O15116 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
LSM1O15116 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
LSM1O15116 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC18.35■□□□□ 0.53
LSM1O15116 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LSM1O15116 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LSM1O15116 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LSM1O15116 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC18.35■□□□□ 0.53
LSM1O15116 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
LSM1O15116 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LSM1O15116 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC18.35■□□□□ 0.53
LSM1O15116 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.35■□□□□ 0.53
LSM1O15116 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LSM1O15116 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LSM1O15116 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LSM1O15116 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LSM1O15116 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LSM1O15116 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LSM1O15116 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.35■□□□□ 0.53
LSM1O15116 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LSM1O15116 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LSM1O15116 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC18.35■□□□□ 0.53
LSM1O15116 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.35■□□□□ 0.53
LSM1O15116 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LSM1O15116 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC18.34■□□□□ 0.53
LSM1O15116 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.34■□□□□ 0.53
LSM1O15116 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LSM1O15116 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LSM1O15116 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LSM1O15116 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
LSM1O15116 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
LSM1O15116 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
LSM1O15116 AC005332.8-201ENST00000622750 2735 ntBASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms