Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC31.35■■■□□ 2.61
ZC3H4Q9UPT8 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC31.35■■■□□ 2.61
ZC3H4Q9UPT8 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC31.35■■■□□ 2.61
ZC3H4Q9UPT8 AC110285.7-201ENST00000624417 1536 ntBASIC31.34■■■□□ 2.61
ZC3H4Q9UPT8 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC31.33■■■□□ 2.61
ZC3H4Q9UPT8 AC120057.4-201ENST00000624722 1615 ntBASIC31.33■■■□□ 2.61
ZC3H4Q9UPT8 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
ZC3H4Q9UPT8 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC31.32■■■□□ 2.6
ZC3H4Q9UPT8 WHAMMP2-203ENST00000563942 1603 ntBASIC31.32■■■□□ 2.6
ZC3H4Q9UPT8 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
ZC3H4Q9UPT8 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC31.31■■■□□ 2.6
ZC3H4Q9UPT8 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC31.31■■■□□ 2.6
ZC3H4Q9UPT8 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC31.31■■■□□ 2.6
ZC3H4Q9UPT8 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC31.31■■■□□ 2.6
ZC3H4Q9UPT8 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC31.31■■■□□ 2.6
ZC3H4Q9UPT8 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC31.31■■■□□ 2.6
ZC3H4Q9UPT8 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC31.3■■■□□ 2.6
ZC3H4Q9UPT8 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
ZC3H4Q9UPT8 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC31.29■■■□□ 2.6
ZC3H4Q9UPT8 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC31.29■■■□□ 2.6
ZC3H4Q9UPT8 DUX4L18-201ENST00000553347 1267 ntBASIC31.29■■■□□ 2.6
ZC3H4Q9UPT8 AC007029.1-201ENST00000604183 313 ntBASIC31.29■■■□□ 2.6
ZC3H4Q9UPT8 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC31.29■■■□□ 2.6
ZC3H4Q9UPT8 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
ZC3H4Q9UPT8 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC31.28■■■□□ 2.6
ZC3H4Q9UPT8 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
ZC3H4Q9UPT8 AL592293.1-201ENST00000502889 1188 ntBASIC31.27■■■□□ 2.6
ZC3H4Q9UPT8 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
ZC3H4Q9UPT8 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC31.26■■■□□ 2.6
ZC3H4Q9UPT8 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC31.26■■■□□ 2.6
ZC3H4Q9UPT8 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC31.26■■■□□ 2.6
ZC3H4Q9UPT8 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC31.26■■■□□ 2.59
ZC3H4Q9UPT8 AL157400.5-201ENST00000507624 621 ntBASIC31.25■■■□□ 2.59
ZC3H4Q9UPT8 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
ZC3H4Q9UPT8 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC31.24■■■□□ 2.59
ZC3H4Q9UPT8 MOB2-207ENST00000614710 705 ntTSL 5 BASIC31.24■■■□□ 2.59
ZC3H4Q9UPT8 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC31.24■■■□□ 2.59
ZC3H4Q9UPT8 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC31.24■■■□□ 2.59
ZC3H4Q9UPT8 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
ZC3H4Q9UPT8 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC31.24■■■□□ 2.59
ZC3H4Q9UPT8 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC31.24■■■□□ 2.59
ZC3H4Q9UPT8 AC131212.1-201ENST00000613771 668 ntBASIC31.23■■■□□ 2.59
ZC3H4Q9UPT8 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
ZC3H4Q9UPT8 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
ZC3H4Q9UPT8 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
ZC3H4Q9UPT8 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC31.22■■■□□ 2.59
ZC3H4Q9UPT8 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
ZC3H4Q9UPT8 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC31.22■■■□□ 2.59
ZC3H4Q9UPT8 REST-210ENST00000638187 1334 ntTSL 5 BASIC31.21■■■□□ 2.59
ZC3H4Q9UPT8 AC009831.1-201ENST00000580420 1582 ntBASIC31.21■■■□□ 2.59
ZC3H4Q9UPT8 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
ZC3H4Q9UPT8 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
ZC3H4Q9UPT8 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
ZC3H4Q9UPT8 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC31.21■■■□□ 2.59
ZC3H4Q9UPT8 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
ZC3H4Q9UPT8 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC31.2■■■□□ 2.58
ZC3H4Q9UPT8 AC009299.2-201ENST00000482477 511 ntBASIC31.2■■■□□ 2.58
ZC3H4Q9UPT8 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
ZC3H4Q9UPT8 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
ZC3H4Q9UPT8 AC133552.2-201ENST00000619106 1032 ntBASIC31.19■■■□□ 2.58
ZC3H4Q9UPT8 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
ZC3H4Q9UPT8 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
ZC3H4Q9UPT8 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC31.17■■■□□ 2.58
ZC3H4Q9UPT8 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
ZC3H4Q9UPT8 HES6-204ENST00000409182 863 ntTSL 2 BASIC31.17■■■□□ 2.58
ZC3H4Q9UPT8 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC31.17■■■□□ 2.58
ZC3H4Q9UPT8 AC074183.2-201ENST00000623112 922 ntBASIC31.17■■■□□ 2.58
ZC3H4Q9UPT8 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
ZC3H4Q9UPT8 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC31.17■■■□□ 2.58
ZC3H4Q9UPT8 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
ZC3H4Q9UPT8 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC31.16■■■□□ 2.58
ZC3H4Q9UPT8 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
ZC3H4Q9UPT8 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
ZC3H4Q9UPT8 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC31.15■■■□□ 2.58
ZC3H4Q9UPT8 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC31.15■■■□□ 2.58
ZC3H4Q9UPT8 PEX7-203ENST00000541292 945 ntTSL 5 BASIC31.14■■■□□ 2.58
ZC3H4Q9UPT8 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
ZC3H4Q9UPT8 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC31.14■■■□□ 2.57
ZC3H4Q9UPT8 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC31.14■■■□□ 2.57
ZC3H4Q9UPT8 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC31.13■■■□□ 2.57
ZC3H4Q9UPT8 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC31.13■■■□□ 2.57
ZC3H4Q9UPT8 RP9P-202ENST00000450133 1212 ntBASIC31.13■■■□□ 2.57
ZC3H4Q9UPT8 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC31.13■■■□□ 2.57
ZC3H4Q9UPT8 MED25-210ENST00000612854 801 ntTSL 5 BASIC31.13■■■□□ 2.57
ZC3H4Q9UPT8 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
ZC3H4Q9UPT8 MED25-214ENST00000622402 642 ntTSL 5 BASIC31.13■■■□□ 2.57
ZC3H4Q9UPT8 AC127502.1-201ENST00000399971 1502 ntBASIC31.13■■■□□ 2.57
ZC3H4Q9UPT8 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC31.12■■■□□ 2.57
ZC3H4Q9UPT8 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC31.12■■■□□ 2.57
ZC3H4Q9UPT8 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC31.12■■■□□ 2.57
ZC3H4Q9UPT8 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC31.12■■■□□ 2.57
ZC3H4Q9UPT8 THA1P-201ENST00000590384 1145 ntBASIC31.12■■■□□ 2.57
ZC3H4Q9UPT8 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
ZC3H4Q9UPT8 GUSBP5-201ENST00000418136 578 ntBASIC31.11■■■□□ 2.57
ZC3H4Q9UPT8 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC31.11■■■□□ 2.57
ZC3H4Q9UPT8 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
ZC3H4Q9UPT8 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC31.09■■■□□ 2.57
ZC3H4Q9UPT8 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC31.09■■■□□ 2.57
ZC3H4Q9UPT8 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC31.09■■■□□ 2.57
ZC3H4Q9UPT8 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms