Protein–RNA interactions for Protein: Q99829

CPNE1, Copine-1, humanhuman

Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1Q99829 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC25.43■■□□□ 1.66
CPNE1Q99829 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
CPNE1Q99829 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC25.42■■□□□ 1.66
CPNE1Q99829 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC25.41■■□□□ 1.66
CPNE1Q99829 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
CPNE1Q99829 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC25.41■■□□□ 1.66
CPNE1Q99829 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
CPNE1Q99829 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
CPNE1Q99829 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC25.4■■□□□ 1.66
CPNE1Q99829 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
CPNE1Q99829 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
CPNE1Q99829 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
CPNE1Q99829 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC25.39■■□□□ 1.65
CPNE1Q99829 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
CPNE1Q99829 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC25.38■■□□□ 1.65
CPNE1Q99829 EI24-212ENST00000615917 1407 ntTSL 2 BASIC25.38■■□□□ 1.65
CPNE1Q99829 CREM-210ENST00000374721 2020 ntTSL 5 BASIC25.38■■□□□ 1.65
CPNE1Q99829 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
CPNE1Q99829 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC25.37■■□□□ 1.65
CPNE1Q99829 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
CPNE1Q99829 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
CPNE1Q99829 MIR6090-201ENST00000622481 60 ntBASIC25.36■■□□□ 1.65
CPNE1Q99829 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC25.36■■□□□ 1.65
CPNE1Q99829 WHAMMP2-203ENST00000563942 1603 ntBASIC25.36■■□□□ 1.65
CPNE1Q99829 DUX4L28-201ENST00000623687 678 ntBASIC25.35■■□□□ 1.65
CPNE1Q99829 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
CPNE1Q99829 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
CPNE1Q99829 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
CPNE1Q99829 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC25.34■■□□□ 1.65
CPNE1Q99829 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
CPNE1Q99829 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC25.33■■□□□ 1.65
CPNE1Q99829 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC25.33■■□□□ 1.65
CPNE1Q99829 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC25.33■■□□□ 1.65
CPNE1Q99829 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC25.33■■□□□ 1.65
CPNE1Q99829 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC25.33■■□□□ 1.65
CPNE1Q99829 LINC00273-201ENST00000539813 1452 ntBASIC25.33■■□□□ 1.65
CPNE1Q99829 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC25.32■■□□□ 1.64
CPNE1Q99829 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
CPNE1Q99829 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
CPNE1Q99829 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
CPNE1Q99829 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC25.32■■□□□ 1.64
CPNE1Q99829 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
CPNE1Q99829 AC018358.1-201ENST00000631079 1402 ntBASIC25.31■■□□□ 1.64
CPNE1Q99829 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC25.31■■□□□ 1.64
CPNE1Q99829 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC25.31■■□□□ 1.64
CPNE1Q99829 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC25.31■■□□□ 1.64
CPNE1Q99829 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
CPNE1Q99829 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC25.3■■□□□ 1.64
CPNE1Q99829 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC25.3■■□□□ 1.64
CPNE1Q99829 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC25.3■■□□□ 1.64
CPNE1Q99829 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
CPNE1Q99829 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
CPNE1Q99829 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC25.28■■□□□ 1.64
CPNE1Q99829 MIR3665-201ENST00000578708 105 ntBASIC25.28■■□□□ 1.64
CPNE1Q99829 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
CPNE1Q99829 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC25.28■■□□□ 1.64
CPNE1Q99829 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC25.27■■□□□ 1.64
CPNE1Q99829 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC25.27■■□□□ 1.64
CPNE1Q99829 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
CPNE1Q99829 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
CPNE1Q99829 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC25.26■■□□□ 1.63
CPNE1Q99829 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
CPNE1Q99829 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC25.25■■□□□ 1.63
CPNE1Q99829 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC25.25■■□□□ 1.63
CPNE1Q99829 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC25.25■■□□□ 1.63
CPNE1Q99829 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC25.24■■□□□ 1.63
CPNE1Q99829 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC25.24■■□□□ 1.63
CPNE1Q99829 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC25.24■■□□□ 1.63
CPNE1Q99829 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
CPNE1Q99829 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC25.23■■□□□ 1.63
CPNE1Q99829 PKM-203ENST00000389093 2279 ntTSL 5 BASIC25.23■■□□□ 1.63
CPNE1Q99829 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
CPNE1Q99829 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
CPNE1Q99829 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
CPNE1Q99829 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
CPNE1Q99829 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
CPNE1Q99829 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC25.2■■□□□ 1.62
CPNE1Q99829 AP006261.1-201ENST00000584783 668 ntBASIC25.2■■□□□ 1.62
CPNE1Q99829 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
CPNE1Q99829 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
CPNE1Q99829 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
CPNE1Q99829 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
CPNE1Q99829 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
CPNE1Q99829 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC25.19■■□□□ 1.62
CPNE1Q99829 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC25.19■■□□□ 1.62
CPNE1Q99829 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
CPNE1Q99829 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CPNE1Q99829 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC25.18■■□□□ 1.62
CPNE1Q99829 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC25.18■■□□□ 1.62
CPNE1Q99829 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CPNE1Q99829 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CPNE1Q99829 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC25.17■■□□□ 1.62
CPNE1Q99829 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC25.17■■□□□ 1.62
CPNE1Q99829 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC25.17■■□□□ 1.62
CPNE1Q99829 SHF-207ENST00000560540 2062 ntTSL 5 BASIC25.17■■□□□ 1.62
CPNE1Q99829 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC25.17■■□□□ 1.62
CPNE1Q99829 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CPNE1Q99829 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CPNE1Q99829 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC25.16■■□□□ 1.62
CPNE1Q99829 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC25.16■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 153.1 ms