Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
FOXA1P55317 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC24.65■■□□□ 1.54
FOXA1P55317 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
FOXA1P55317 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC24.64■■□□□ 1.54
FOXA1P55317 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.53
FOXA1P55317 WHAMMP2-203ENST00000563942 1603 ntBASIC24.64■■□□□ 1.53
FOXA1P55317 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC24.63■■□□□ 1.53
FOXA1P55317 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC24.63■■□□□ 1.53
FOXA1P55317 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
FOXA1P55317 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC24.63■■□□□ 1.53
FOXA1P55317 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
FOXA1P55317 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
FOXA1P55317 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
FOXA1P55317 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC24.63■■□□□ 1.53
FOXA1P55317 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
FOXA1P55317 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
FOXA1P55317 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
FOXA1P55317 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
FOXA1P55317 AC108673.1-201ENST00000510422 1159 ntBASIC24.61■■□□□ 1.53
FOXA1P55317 MEST-211ENST00000437945 1455 ntTSL 5 BASIC24.61■■□□□ 1.53
FOXA1P55317 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC24.61■■□□□ 1.53
FOXA1P55317 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC24.6■■□□□ 1.53
FOXA1P55317 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
FOXA1P55317 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
FOXA1P55317 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
FOXA1P55317 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC24.59■■□□□ 1.53
FOXA1P55317 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
FOXA1P55317 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
FOXA1P55317 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
FOXA1P55317 PKM-203ENST00000389093 2279 ntTSL 5 BASIC24.59■■□□□ 1.53
FOXA1P55317 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
FOXA1P55317 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.52
FOXA1P55317 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
FOXA1P55317 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC24.57■■□□□ 1.52
FOXA1P55317 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC24.57■■□□□ 1.52
FOXA1P55317 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
FOXA1P55317 EI24-212ENST00000615917 1407 ntTSL 2 BASIC24.55■■□□□ 1.52
FOXA1P55317 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC24.55■■□□□ 1.52
FOXA1P55317 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
FOXA1P55317 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC24.54■■□□□ 1.52
FOXA1P55317 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC24.54■■□□□ 1.52
FOXA1P55317 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
FOXA1P55317 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC24.54■■□□□ 1.52
FOXA1P55317 LINC00273-201ENST00000539813 1452 ntBASIC24.53■■□□□ 1.52
FOXA1P55317 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC24.53■■□□□ 1.52
FOXA1P55317 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
FOXA1P55317 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC24.52■■□□□ 1.52
FOXA1P55317 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC24.52■■□□□ 1.52
FOXA1P55317 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC24.52■■□□□ 1.52
FOXA1P55317 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
FOXA1P55317 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC24.51■■□□□ 1.51
FOXA1P55317 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
FOXA1P55317 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
FOXA1P55317 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
FOXA1P55317 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC24.51■■□□□ 1.51
FOXA1P55317 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
FOXA1P55317 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC24.5■■□□□ 1.51
FOXA1P55317 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC24.5■■□□□ 1.51
FOXA1P55317 MIR3665-201ENST00000578708 105 ntBASIC24.5■■□□□ 1.51
FOXA1P55317 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
FOXA1P55317 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC24.49■■□□□ 1.51
FOXA1P55317 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
FOXA1P55317 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC24.49■■□□□ 1.51
FOXA1P55317 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
FOXA1P55317 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
FOXA1P55317 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC24.49■■□□□ 1.51
FOXA1P55317 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
FOXA1P55317 CREM-210ENST00000374721 2020 ntTSL 5 BASIC24.48■■□□□ 1.51
FOXA1P55317 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC24.48■■□□□ 1.51
FOXA1P55317 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC24.48■■□□□ 1.51
FOXA1P55317 AC018358.1-201ENST00000631079 1402 ntBASIC24.48■■□□□ 1.51
FOXA1P55317 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
FOXA1P55317 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
FOXA1P55317 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC24.47■■□□□ 1.51
FOXA1P55317 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
FOXA1P55317 NRG1-221ENST00000614767 762 ntTSL 5 BASIC24.47■■□□□ 1.51
FOXA1P55317 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC24.47■■□□□ 1.51
FOXA1P55317 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC24.47■■□□□ 1.51
FOXA1P55317 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC24.46■■□□□ 1.51
FOXA1P55317 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
FOXA1P55317 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC24.45■■□□□ 1.51
FOXA1P55317 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC24.45■■□□□ 1.5
FOXA1P55317 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.5
FOXA1P55317 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
FOXA1P55317 SHF-207ENST00000560540 2062 ntTSL 5 BASIC24.45■■□□□ 1.5
FOXA1P55317 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC24.44■■□□□ 1.5
FOXA1P55317 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC24.44■■□□□ 1.5
FOXA1P55317 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC24.44■■□□□ 1.5
FOXA1P55317 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
FOXA1P55317 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
FOXA1P55317 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
FOXA1P55317 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC24.42■■□□□ 1.5
FOXA1P55317 AP006261.1-201ENST00000584783 668 ntBASIC24.42■■□□□ 1.5
FOXA1P55317 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
FOXA1P55317 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
FOXA1P55317 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC24.41■■□□□ 1.5
FOXA1P55317 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC24.41■■□□□ 1.5
FOXA1P55317 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC24.4■■□□□ 1.5
FOXA1P55317 AC087741.3-201ENST00000624270 1347 ntBASIC24.4■■□□□ 1.5
FOXA1P55317 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 111.1 ms