Protein–RNA interactions for Protein: Q9BRR0

ZKSCAN3, Zinc finger protein with KRAB and SCAN domains 3, humanhuman

Predictions only

Length 538 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZKSCAN3Q9BRR0 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC30.31■■■□□ 2.44
ZKSCAN3Q9BRR0 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC30.31■■■□□ 2.44
ZKSCAN3Q9BRR0 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
ZKSCAN3Q9BRR0 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
ZKSCAN3Q9BRR0 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
ZKSCAN3Q9BRR0 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
ZKSCAN3Q9BRR0 RNF166-209ENST00000567844 633 ntTSL 5 BASIC30.3■■■□□ 2.44
ZKSCAN3Q9BRR0 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC30.3■■■□□ 2.44
ZKSCAN3Q9BRR0 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC30.3■■■□□ 2.44
ZKSCAN3Q9BRR0 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC30.29■■■□□ 2.44
ZKSCAN3Q9BRR0 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC30.28■■■□□ 2.44
ZKSCAN3Q9BRR0 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC30.27■■■□□ 2.44
ZKSCAN3Q9BRR0 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
ZKSCAN3Q9BRR0 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC30.27■■■□□ 2.44
ZKSCAN3Q9BRR0 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC30.27■■■□□ 2.44
ZKSCAN3Q9BRR0 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC30.26■■■□□ 2.43
ZKSCAN3Q9BRR0 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
ZKSCAN3Q9BRR0 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC30.25■■■□□ 2.43
ZKSCAN3Q9BRR0 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
ZKSCAN3Q9BRR0 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC30.25■■■□□ 2.43
ZKSCAN3Q9BRR0 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC30.25■■■□□ 2.43
ZKSCAN3Q9BRR0 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC30.24■■■□□ 2.43
ZKSCAN3Q9BRR0 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
ZKSCAN3Q9BRR0 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
ZKSCAN3Q9BRR0 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC30.23■■■□□ 2.43
ZKSCAN3Q9BRR0 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC30.23■■■□□ 2.43
ZKSCAN3Q9BRR0 CHML-204ENST00000638121 920 ntTSL 2 BASIC30.23■■■□□ 2.43
ZKSCAN3Q9BRR0 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC30.23■■■□□ 2.43
ZKSCAN3Q9BRR0 AC100797.4-201ENST00000631653 1827 ntBASIC30.22■■■□□ 2.43
ZKSCAN3Q9BRR0 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC30.22■■■□□ 2.43
ZKSCAN3Q9BRR0 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
ZKSCAN3Q9BRR0 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC30.22■■■□□ 2.43
ZKSCAN3Q9BRR0 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC30.22■■■□□ 2.43
ZKSCAN3Q9BRR0 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
ZKSCAN3Q9BRR0 CR559946.2-201ENST00000623684 991 ntBASIC30.21■■■□□ 2.43
ZKSCAN3Q9BRR0 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC30.21■■■□□ 2.43
ZKSCAN3Q9BRR0 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC30.21■■■□□ 2.43
ZKSCAN3Q9BRR0 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC30.2■■■□□ 2.43
ZKSCAN3Q9BRR0 AP004833.2-201ENST00000532228 1454 ntBASIC30.2■■■□□ 2.43
ZKSCAN3Q9BRR0 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC30.2■■■□□ 2.43
ZKSCAN3Q9BRR0 DUX4L13-201ENST00000554103 1267 ntBASIC30.2■■■□□ 2.43
ZKSCAN3Q9BRR0 DUX4L15-201ENST00000611059 1267 ntBASIC30.2■■■□□ 2.43
ZKSCAN3Q9BRR0 DUX4L23-201ENST00000615195 1269 ntBASIC30.2■■■□□ 2.43
ZKSCAN3Q9BRR0 DUX4L24-201ENST00000617576 1269 ntBASIC30.2■■■□□ 2.43
ZKSCAN3Q9BRR0 DUX4L22-201ENST00000618238 1269 ntBASIC30.2■■■□□ 2.43
ZKSCAN3Q9BRR0 DUX4L20-201ENST00000619712 1269 ntBASIC30.2■■■□□ 2.43
ZKSCAN3Q9BRR0 DUX4L21-201ENST00000622058 1269 ntBASIC30.2■■■□□ 2.43
ZKSCAN3Q9BRR0 DUX4L10-201ENST00000622460 1267 ntBASIC30.2■■■□□ 2.43
ZKSCAN3Q9BRR0 DUX4L25-201ENST00000624915 1269 ntBASIC30.2■■■□□ 2.43
ZKSCAN3Q9BRR0 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC30.2■■■□□ 2.42
ZKSCAN3Q9BRR0 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC30.19■■■□□ 2.42
ZKSCAN3Q9BRR0 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
ZKSCAN3Q9BRR0 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
ZKSCAN3Q9BRR0 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC30.19■■■□□ 2.42
ZKSCAN3Q9BRR0 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
ZKSCAN3Q9BRR0 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC30.19■■■□□ 2.42
ZKSCAN3Q9BRR0 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC30.19■■■□□ 2.42
ZKSCAN3Q9BRR0 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC30.19■■■□□ 2.42
ZKSCAN3Q9BRR0 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
ZKSCAN3Q9BRR0 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
ZKSCAN3Q9BRR0 GDI1-215ENST00000630693 786 ntTSL 4 BASIC30.18■■■□□ 2.42
ZKSCAN3Q9BRR0 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
ZKSCAN3Q9BRR0 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC30.18■■■□□ 2.42
ZKSCAN3Q9BRR0 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
ZKSCAN3Q9BRR0 MIR3648-2-201ENST00000581792 180 ntBASIC30.17■■■□□ 2.42
ZKSCAN3Q9BRR0 MIR3648-1-201ENST00000615959 180 ntBASIC30.17■■■□□ 2.42
ZKSCAN3Q9BRR0 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC30.17■■■□□ 2.42
ZKSCAN3Q9BRR0 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
ZKSCAN3Q9BRR0 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
ZKSCAN3Q9BRR0 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC30.16■■■□□ 2.42
ZKSCAN3Q9BRR0 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC30.16■■■□□ 2.42
ZKSCAN3Q9BRR0 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC30.16■■■□□ 2.42
ZKSCAN3Q9BRR0 AC016575.1-201ENST00000607026 382 ntBASIC30.16■■■□□ 2.42
ZKSCAN3Q9BRR0 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
ZKSCAN3Q9BRR0 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
ZKSCAN3Q9BRR0 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
ZKSCAN3Q9BRR0 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC30.14■■■□□ 2.42
ZKSCAN3Q9BRR0 RPS2-202ENST00000526522 924 ntTSL 2 BASIC30.14■■■□□ 2.42
ZKSCAN3Q9BRR0 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC30.14■■■□□ 2.42
ZKSCAN3Q9BRR0 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC30.14■■■□□ 2.41
ZKSCAN3Q9BRR0 MACF1-219ENST00000484793 834 ntTSL 2 BASIC30.13■■■□□ 2.41
ZKSCAN3Q9BRR0 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC30.13■■■□□ 2.41
ZKSCAN3Q9BRR0 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC30.13■■■□□ 2.41
ZKSCAN3Q9BRR0 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
ZKSCAN3Q9BRR0 MEST-211ENST00000437945 1455 ntTSL 5 BASIC30.12■■■□□ 2.41
ZKSCAN3Q9BRR0 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
ZKSCAN3Q9BRR0 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC30.12■■■□□ 2.41
ZKSCAN3Q9BRR0 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
ZKSCAN3Q9BRR0 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC30.11■■■□□ 2.41
ZKSCAN3Q9BRR0 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
ZKSCAN3Q9BRR0 MBP-237ENST00000579129 1052 ntTSL 5 BASIC30.11■■■□□ 2.41
ZKSCAN3Q9BRR0 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC30.11■■■□□ 2.41
ZKSCAN3Q9BRR0 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
ZKSCAN3Q9BRR0 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
ZKSCAN3Q9BRR0 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC30.09■■■□□ 2.41
ZKSCAN3Q9BRR0 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC30.09■■■□□ 2.41
ZKSCAN3Q9BRR0 AGPS-202ENST00000409888 815 ntTSL 4 BASIC30.09■■■□□ 2.41
ZKSCAN3Q9BRR0 HLA-V-202ENST00000446817 847 ntBASIC30.09■■■□□ 2.41
ZKSCAN3Q9BRR0 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC30.09■■■□□ 2.41
ZKSCAN3Q9BRR0 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC30.08■■■□□ 2.41
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms