Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
SH3RF1Q7Z6J0 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC29.61■■■□□ 2.33
SH3RF1Q7Z6J0 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC29.61■■■□□ 2.33
SH3RF1Q7Z6J0 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC29.6■■■□□ 2.33
SH3RF1Q7Z6J0 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
SH3RF1Q7Z6J0 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC29.6■■■□□ 2.33
SH3RF1Q7Z6J0 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC29.6■■■□□ 2.33
SH3RF1Q7Z6J0 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
SH3RF1Q7Z6J0 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
SH3RF1Q7Z6J0 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
SH3RF1Q7Z6J0 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC29.58■■■□□ 2.33
SH3RF1Q7Z6J0 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC29.58■■■□□ 2.33
SH3RF1Q7Z6J0 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC29.57■■■□□ 2.32
SH3RF1Q7Z6J0 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
SH3RF1Q7Z6J0 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC29.56■■■□□ 2.32
SH3RF1Q7Z6J0 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
SH3RF1Q7Z6J0 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC29.56■■■□□ 2.32
SH3RF1Q7Z6J0 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC29.56■■■□□ 2.32
SH3RF1Q7Z6J0 DUX4L13-201ENST00000554103 1267 ntBASIC29.55■■■□□ 2.32
SH3RF1Q7Z6J0 DUX4L15-201ENST00000611059 1267 ntBASIC29.55■■■□□ 2.32
SH3RF1Q7Z6J0 DUX4L23-201ENST00000615195 1269 ntBASIC29.55■■■□□ 2.32
SH3RF1Q7Z6J0 DUX4L24-201ENST00000617576 1269 ntBASIC29.55■■■□□ 2.32
SH3RF1Q7Z6J0 DUX4L22-201ENST00000618238 1269 ntBASIC29.55■■■□□ 2.32
SH3RF1Q7Z6J0 DUX4L20-201ENST00000619712 1269 ntBASIC29.55■■■□□ 2.32
SH3RF1Q7Z6J0 DUX4L21-201ENST00000622058 1269 ntBASIC29.55■■■□□ 2.32
SH3RF1Q7Z6J0 DUX4L10-201ENST00000622460 1267 ntBASIC29.55■■■□□ 2.32
SH3RF1Q7Z6J0 DUX4L25-201ENST00000624915 1269 ntBASIC29.55■■■□□ 2.32
SH3RF1Q7Z6J0 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
SH3RF1Q7Z6J0 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC29.54■■■□□ 2.32
SH3RF1Q7Z6J0 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC29.54■■■□□ 2.32
SH3RF1Q7Z6J0 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC29.53■■■□□ 2.32
SH3RF1Q7Z6J0 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
SH3RF1Q7Z6J0 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC29.53■■■□□ 2.32
SH3RF1Q7Z6J0 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC29.52■■■□□ 2.32
SH3RF1Q7Z6J0 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
SH3RF1Q7Z6J0 HES6-205ENST00000409356 528 ntTSL 2 BASIC29.51■■■□□ 2.31
SH3RF1Q7Z6J0 AC010864.1-201ENST00000609407 1511 ntBASIC29.5■■■□□ 2.31
SH3RF1Q7Z6J0 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC29.5■■■□□ 2.31
SH3RF1Q7Z6J0 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC29.5■■■□□ 2.31
SH3RF1Q7Z6J0 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
SH3RF1Q7Z6J0 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
SH3RF1Q7Z6J0 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC29.49■■■□□ 2.31
SH3RF1Q7Z6J0 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC29.48■■■□□ 2.31
SH3RF1Q7Z6J0 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC29.48■■■□□ 2.31
SH3RF1Q7Z6J0 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
SH3RF1Q7Z6J0 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
SH3RF1Q7Z6J0 RARRES2P2-201ENST00000394842 485 ntBASIC29.47■■■□□ 2.31
SH3RF1Q7Z6J0 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC29.46■■■□□ 2.31
SH3RF1Q7Z6J0 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
SH3RF1Q7Z6J0 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
SH3RF1Q7Z6J0 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC29.45■■■□□ 2.31
SH3RF1Q7Z6J0 SRP68-213ENST00000629930 165 ntTSL 5 BASIC29.45■■■□□ 2.31
SH3RF1Q7Z6J0 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC29.45■■■□□ 2.3
SH3RF1Q7Z6J0 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC29.44■■■□□ 2.3
SH3RF1Q7Z6J0 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC29.44■■■□□ 2.3
SH3RF1Q7Z6J0 AL139393.2-201ENST00000608721 2025 ntBASIC29.44■■■□□ 2.3
SH3RF1Q7Z6J0 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
SH3RF1Q7Z6J0 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC29.43■■■□□ 2.3
SH3RF1Q7Z6J0 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC29.43■■■□□ 2.3
SH3RF1Q7Z6J0 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
SH3RF1Q7Z6J0 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
SH3RF1Q7Z6J0 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC29.42■■■□□ 2.3
SH3RF1Q7Z6J0 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
SH3RF1Q7Z6J0 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
SH3RF1Q7Z6J0 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC29.41■■■□□ 2.3
SH3RF1Q7Z6J0 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC29.41■■■□□ 2.3
SH3RF1Q7Z6J0 CHML-204ENST00000638121 920 ntTSL 2 BASIC29.41■■■□□ 2.3
SH3RF1Q7Z6J0 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
SH3RF1Q7Z6J0 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
SH3RF1Q7Z6J0 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
SH3RF1Q7Z6J0 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC29.4■■■□□ 2.3
SH3RF1Q7Z6J0 ABHD17AP5-201ENST00000580133 923 ntBASIC29.39■■■□□ 2.3
SH3RF1Q7Z6J0 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC29.38■■■□□ 2.29
SH3RF1Q7Z6J0 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
SH3RF1Q7Z6J0 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
SH3RF1Q7Z6J0 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
SH3RF1Q7Z6J0 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC29.38■■■□□ 2.29
SH3RF1Q7Z6J0 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
SH3RF1Q7Z6J0 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
SH3RF1Q7Z6J0 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
SH3RF1Q7Z6J0 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC29.38■■■□□ 2.29
SH3RF1Q7Z6J0 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC29.38■■■□□ 2.29
SH3RF1Q7Z6J0 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC29.38■■■□□ 2.29
SH3RF1Q7Z6J0 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
SH3RF1Q7Z6J0 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
SH3RF1Q7Z6J0 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
SH3RF1Q7Z6J0 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
SH3RF1Q7Z6J0 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
SH3RF1Q7Z6J0 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
SH3RF1Q7Z6J0 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
SH3RF1Q7Z6J0 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC29.35■■■□□ 2.29
SH3RF1Q7Z6J0 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC29.35■■■□□ 2.29
SH3RF1Q7Z6J0 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC29.35■■■□□ 2.29
SH3RF1Q7Z6J0 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
SH3RF1Q7Z6J0 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC29.35■■■□□ 2.29
SH3RF1Q7Z6J0 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC29.34■■■□□ 2.29
SH3RF1Q7Z6J0 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC29.34■■■□□ 2.29
SH3RF1Q7Z6J0 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
SH3RF1Q7Z6J0 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
SH3RF1Q7Z6J0 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC29.32■■■□□ 2.28
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms