Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 HDLBP-215ENST00000427487 924 ntTSL 516.04■□□□□ 0.163e-6■□□□□ 11.1
U2AF1Q01081 SCML1-204ENST00000398080 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.133e-6■□□□□ 11.1
U2AF1Q01081 HDLBP-214ENST00000427183 6238 ntTSL 2 BASIC15.62■□□□□ 0.093e-6■□□□□ 11.1
U2AF1Q01081 ABCB6-213ENST00000497882 3008 ntTSL 215.25■□□□□ 0.033e-6■□□□□ 11.1
U2AF1Q01081 LGR5-206ENST00000550851 4095 ntTSL 215.2■□□□□ 0.021e-6■□□□□ 11.1
U2AF1Q01081 HDLBP-202ENST00000373292 3297 ntTSL 514.76□□□□□ -0.053e-6■□□□□ 11.1
U2AF1Q01081 LGR5-203ENST00000540815 2800 ntTSL 1 (best) BASIC14.67□□□□□ -0.061e-6■□□□□ 11.1
U2AF1Q01081 HDLBP-203ENST00000391975 6372 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.093e-6■□□□□ 11.1
U2AF1Q01081 SCML1-202ENST00000380043 2830 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.173e-6■□□□□ 11.1
U2AF1Q01081 ABCB6-212ENST00000496984 707 ntTSL 413.51□□□□□ -0.253e-6■□□□□ 11.1
U2AF1Q01081 TTLL4-219ENST00000480929 2421 ntTSL 213.14□□□□□ -0.313e-6■□□□□ 11.1
U2AF1Q01081 ZMIZ1-204ENST00000478357 4252 ntTSL 212.55□□□□□ -0.43e-6■□□□□ 11.1
U2AF1Q01081 HDLBP-225ENST00000452931 801 ntTSL 511.91□□□□□ -0.53e-6■□□□□ 11.1
U2AF1Q01081 TTLL4-217ENST00000475950 587 ntTSL 311.67□□□□□ -0.543e-6■□□□□ 11.1
U2AF1Q01081 HDLBP-201ENST00000310931 4571 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.553e-6■□□□□ 11.1
U2AF1Q01081 TTLL4-213ENST00000461181 590 ntTSL 411.49□□□□□ -0.573e-6■□□□□ 11.1
U2AF1Q01081 SCML1-206ENST00000427362 846 ntTSL 511.09□□□□□ -0.633e-6■□□□□ 11.1
U2AF1Q01081 TTLL4-221ENST00000494428 829 ntTSL 310.2□□□□□ -0.783e-6■□□□□ 11.1
U2AF1Q01081 SCML1-203ENST00000380045 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC9.87□□□□□ -0.833e-6■□□□□ 11.1
U2AF1Q01081 APOH-203ENST00000581797 748 ntTSL 38.35□□□□□ -1.071e-11■□□□□ 11.1
U2AF1Q01081 SCML1-207ENST00000487842 4615 ntTSL 1 (best)6.87□□□□□ -1.313e-6■□□□□ 11.1
U2AF1Q01081 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.621e-11■□□□□ 11.1
U2AF1Q01081 APOH-204ENST00000585162 407 ntTSL 24.7□□□□□ -1.661e-11■□□□□ 11.1
U2AF1Q01081 PAPD4-215ENST00000514095 575 ntTSL 419.7■□□□□ 0.746e-7■□□□□ 11
U2AF1Q01081 PAPD4-217ENST00000515807 576 ntTSL 416.47■□□□□ 0.236e-7■□□□□ 11
U2AF1Q01081 PAPD4-207ENST00000504233 2997 ntTSL 1 (best) BASIC14.59□□□□□ -0.076e-7■□□□□ 11
U2AF1Q01081 PAPD4-201ENST00000296783 3129 ntAPPRIS P3 TSL 2 BASIC13.66□□□□□ -0.226e-7■□□□□ 11
U2AF1Q01081 PAPD4-204ENST00000453514 3523 ntAPPRIS P3 TSL 5 BASIC11.14□□□□□ -0.636e-7■□□□□ 11
U2AF1Q01081 PAPD4-206ENST00000503620 582 ntTSL 310.76□□□□□ -0.696e-7■□□□□ 11
U2AF1Q01081 PAPD4-202ENST00000423041 3223 ntAPPRIS ALT1 TSL 1 (best) BASIC10.65□□□□□ -0.716e-7■□□□□ 11
U2AF1Q01081 PAPD4-203ENST00000428308 2204 ntAPPRIS P3 TSL 2 BASIC8.18□□□□□ -1.16e-7■□□□□ 11
U2AF1Q01081 PAPD4-209ENST00000505571 781 ntTSL 35.25□□□□□ -1.576e-7■□□□□ 11
U2AF1Q01081 ARGLU1-203ENST00000400198 3390 ntTSL 1 (best) BASIC17.54■□□□□ 0.48e-9■□□□□ 11
U2AF1Q01081 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC7.14□□□□□ -1.278e-9■□□□□ 11
U2AF1Q01081 ARGLU1-201ENST00000360629 361 ntTSL 24.28□□□□□ -1.728e-9■□□□□ 11
U2AF1Q01081 HP1BP3-209ENST00000437575 473 ntTSL 333.96■■■■□ 3.036e-12■□□□□ 11
U2AF1Q01081 EGLN2-208ENST00000593972 935 ntTSL 232.82■■■□□ 2.843e-7■□□□□ 11
U2AF1Q01081 EGLN2-210ENST00000594380 597 ntTSL 430.98■■■□□ 2.553e-7■□□□□ 11
U2AF1Q01081 EGLN2-203ENST00000593397 572 ntTSL 230.98■■■□□ 2.553e-7■□□□□ 11
U2AF1Q01081 EGLN2-215ENST00000598654 590 ntTSL 330.29■■■□□ 2.443e-7■□□□□ 11
U2AF1Q01081 MSMO1-205ENST00000507013 973 ntTSL 228.7■■■□□ 2.186e-12■□□□□ 11
U2AF1Q01081 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.823e-7■□□□□ 11
U2AF1Q01081 DDX39A-204ENST00000586558 1127 ntTSL 225.6■■□□□ 1.692e-6■□□□□ 11
U2AF1Q01081 HP1BP3-206ENST00000419490 538 ntTSL 425.51■■□□□ 1.676e-12■□□□□ 11
U2AF1Q01081 RAB4B-EGLN2-203ENST00000601949 482 ntTSL 424.78■■□□□ 1.563e-7■□□□□ 11
U2AF1Q01081 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.493e-7■□□□□ 11
U2AF1Q01081 EGLN2-206ENST00000593525 709 ntTSL 323.96■■□□□ 1.433e-7■□□□□ 11
U2AF1Q01081 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.273e-7■□□□□ 11
U2AF1Q01081 EGLN2-217ENST00000601733 584 ntTSL 422.67■■□□□ 1.223e-7■□□□□ 11
U2AF1Q01081 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC21.87■■□□□ 1.096e-12■□□□□ 11
U2AF1Q01081 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.963e-7■□□□□ 11
U2AF1Q01081 HP1BP3-204ENST00000414993 727 ntTSL 420.98■□□□□ 0.956e-12■□□□□ 11
U2AF1Q01081 EGLN2-213ENST00000596517 574 ntTSL 418.88■□□□□ 0.613e-7■□□□□ 11
U2AF1Q01081 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.56e-12■□□□□ 11
U2AF1Q01081 RAB4B-EGLN2-202ENST00000596216 624 ntTSL 317.68■□□□□ 0.423e-7■□□□□ 11
U2AF1Q01081 AL589666.1-201ENST00000503906 835 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.274e-9■□□□□ 11
U2AF1Q01081 SYNCRIP-201ENST00000355238 6449 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.124e-9■□□□□ 11
U2AF1Q01081 CHD2-207ENST00000626782 2131 ntTSL 2 BASIC13.61□□□□□ -0.233e-7■□□□□ 11
U2AF1Q01081 ZC3H15-201ENST00000337859 2138 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.654e-9■□□□□ 11
U2AF1Q01081 AC013394.1-202ENST00000630790 4499 ntTSL 210.96□□□□□ -0.663e-7■□□□□ 11
U2AF1Q01081 ZC3H15-202ENST00000421536 1101 ntTSL 210.4□□□□□ -0.744e-9■□□□□ 11
U2AF1Q01081 ZC3H15-209ENST00000498757 881 ntTSL 28.91□□□□□ -0.984e-9■□□□□ 11
U2AF1Q01081 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC8.19□□□□□ -1.13e-7■□□□□ 11
U2AF1Q01081 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC7.39□□□□□ -1.233e-7■□□□□ 11
U2AF1Q01081 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC7.32□□□□□ -1.244e-9■□□□□ 11
U2AF1Q01081 MSMO1-204ENST00000505270 482 ntTSL 36.26□□□□□ -1.416e-12■□□□□ 11
U2AF1Q01081 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC6.12□□□□□ -1.436e-12■□□□□ 11
U2AF1Q01081 CHD2-228ENST00000637613 986 ntTSL 54.88□□□□□ -1.633e-7■□□□□ 11
U2AF1Q01081 CHD2-203ENST00000625243 361 ntTSL 1 (best)3.28□□□□□ -1.883e-7■□□□□ 11
U2AF1Q01081 WAC-201ENST00000345541 4526 ntTSL 1 (best)4.83□□□□□ -1.643e-7■□□□□ 11
U2AF1Q01081 PAN2-204ENST00000547100 483 ntTSL 37.7□□□□□ -1.181e-9■□□□□ 11
U2AF1Q01081 PAN2-212ENST00000549090 423 ntTSL 25.41□□□□□ -1.541e-9■□□□□ 11
U2AF1Q01081 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC23.82■■□□□ 1.41e-8■□□□□ 11
U2AF1Q01081 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.161e-8■□□□□ 11
U2AF1Q01081 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.911e-8■□□□□ 11
U2AF1Q01081 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.891e-8■□□□□ 11
U2AF1Q01081 AMBP-204ENST00000603230 1057 ntTSL 1 (best)20.54■□□□□ 0.881e-8■□□□□ 11
U2AF1Q01081 AMBP-203ENST00000540645 1356 ntTSL 216.99■□□□□ 0.311e-8■□□□□ 11
U2AF1Q01081 ARID1B-201ENST00000319584 2199 ntTSL 216.55■□□□□ 0.241e-8■□□□□ 11
U2AF1Q01081 ARID1B-227ENST00000637568 4610 ntTSL 515.96■□□□□ 0.151e-8■□□□□ 11
U2AF1Q01081 ARID1B-204ENST00000400790 2887 ntTSL 315.81■□□□□ 0.121e-8■□□□□ 11
U2AF1Q01081 ARID1B-223ENST00000637015 5284 ntAPPRIS ALT2 TSL 515.54■□□□□ 0.081e-8■□□□□ 11
U2AF1Q01081 ARID1B-230ENST00000637810 5073 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.091e-8■□□□□ 11
U2AF1Q01081 AMBP-202ENST00000466610 579 ntTSL 313.74□□□□□ -0.211e-8■□□□□ 11
U2AF1Q01081 ARID1B-210ENST00000635849 5830 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.331e-8■□□□□ 11
U2AF1Q01081 ARID1B-221ENST00000636940 5910 ntTSL 512.82□□□□□ -0.361e-8■□□□□ 11
U2AF1Q01081 ARID1B-232ENST00000637904 5913 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.431e-8■□□□□ 11
U2AF1Q01081 ARID1B-212ENST00000635957 4048 ntAPPRIS ALT2 TSL 512.3□□□□□ -0.441e-8■□□□□ 11
U2AF1Q01081 ARID1B-205ENST00000414678 6528 ntAPPRIS ALT2 TSL 511.07□□□□□ -0.641e-8■□□□□ 11
U2AF1Q01081 ARID1B-224ENST00000637170 831 nt10.96□□□□□ -0.651e-8■□□□□ 11
U2AF1Q01081 ARID1B-229ENST00000637741 3915 ntTSL 510.3□□□□□ -0.761e-8■□□□□ 11
U2AF1Q01081 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.793e-6■□□□□ 11
U2AF1Q01081 PSMD2-205ENST00000435761 2574 ntTSL 2 BASIC15.82■□□□□ 0.123e-6■□□□□ 11
U2AF1Q01081 PSMD2-206ENST00000439383 2633 ntTSL 2 BASIC12.92□□□□□ -0.343e-6■□□□□ 11
U2AF1Q01081 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC18.98■□□□□ 0.634e-8■□□□□ 11
U2AF1Q01081 SF3B1-211ENST00000487698 2127 ntTSL 1 (best) BASIC12.49□□□□□ -0.414e-8■□□□□ 11
U2AF1Q01081 SF3B1-203ENST00000414174 593 ntTSL 44.31□□□□□ -1.724e-8■□□□□ 11
U2AF1Q01081 OGT-205ENST00000459760 541 ntTSL 54.95□□□□□ -1.628e-16■□□□□ 11
U2AF1Q01081 UBAP2L-207ENST00000428931 3988 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.194e-8■□□□□ 11
U2AF1Q01081 UBAP2L-201ENST00000271877 3997 ntTSL 5 BASIC12.97□□□□□ -0.334e-8■□□□□ 11
Retrieved 100 of 10,096 protein–RNA pairs in 323.1 ms