RNA–Protein interactions for RNA: ENST00000414174.1

SF3B1-203, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 4

Gene SF3B1, Length 593 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-203ENST00000414174 AEBP2Q6ZN18 517 aaPredicted RBP17.61■□□□□ 0.41
SF3B1-203ENST00000414174 CHIC1Q5VXU3 224 aa16.5■□□□□ 0.23
SF3B1-203ENST00000414174 SENP3Q9H4L4 574 aaPredicted RBP15.14■□□□□ 0.01
SF3B1-203ENST00000414174 PHF23Q9BUL5 403 aaPredicted RBP14.87□□□□□ -0.03
SF3B1-203ENST00000414174 FOXD1Q16676 465 aa14.12□□□□□ -0.15
SF3B1-203ENST00000414174 POTEDQ86YR6 584 aa13.74□□□□□ -0.21
SF3B1-203ENST00000414174 MSH5O43196 834 aa13.42□□□□□ -0.26
SF3B1-203ENST00000414174 PIAS4Q8N2W9 510 aaPredicted RBP13.07□□□□□ -0.32
SF3B1-203ENST00000414174 PLPPR3Q6T4P5 718 aa12.9□□□□□ -0.34
SF3B1-203ENST00000414174 PPP6R1Q9UPN7 881 aa12.89□□□□□ -0.35
SF3B1-203ENST00000414174 ADRA2BP18089 450 aa12.8□□□□□ -0.36
SF3B1-203ENST00000414174 DMRT2Q9Y5R5 561 aa11.94□□□□□ -0.5
SF3B1-203ENST00000414174 MAPK8IP2Q13387 824 aaPredicted RBP11.88□□□□□ -0.51
SF3B1-203ENST00000414174 SCAF1Q9H7N4 1312 aaKnown RBP11.81□□□□□ -0.52
SF3B1-203ENST00000414174 CACNB1Q02641 598 aaPredicted RBP11.72□□□□□ -0.53
SF3B1-203ENST00000414174 RNF39Q9H2S5 420 aa11.4□□□□□ -0.58
SF3B1-203ENST00000414174 DCAF8L1A6NGE4 600 aa11.37□□□□□ -0.59
SF3B1-203ENST00000414174 HOXD11P31277 338 aaPredicted RBP11.36□□□□□ -0.59
SF3B1-203ENST00000414174 C1QBPQ07021 282 aaKnown RBP11.24□□□□□ -0.61
SF3B1-203ENST00000414174 PPP4R3CPQ6ZMV5 832 aa11.23□□□□□ -0.61
SF3B1-203ENST00000414174 RNF216Q9NWF9 866 aaPredicted RBP11.16□□□□□ -0.62
SF3B1-203ENST00000414174 CNKSR2Q8WXI2 1034 aa11.15□□□□□ -0.62
SF3B1-203ENST00000414174 DNAJC5BQ9UF47 199 aa11.14□□□□□ -0.63
SF3B1-203ENST00000414174 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.77□□□□□ -0.699e-22■■□□□ 14.5
SF3B1-203ENST00000414174 NCBP3Q53F19 620 aaKnown RBP10.72□□□□□ -0.69
SF3B1-203ENST00000414174 POTEHQ6S545 545 aa10.69□□□□□ -0.7
SF3B1-203ENST00000414174 DSG3P32926 999 aa10.53□□□□□ -0.72
SF3B1-203ENST00000414174 NPM3O75607 178 aaKnown RBP10.51□□□□□ -0.73
SF3B1-203ENST00000414174 U3KPZ7 1027 aaPredicted RBP10.49□□□□□ -0.73
SF3B1-203ENST00000414174 CAPN15O75808 1086 aa10.44□□□□□ -0.74
SF3B1-203ENST00000414174 SPINK5Q9NQ38 1064 aaPredicted RBP10.44□□□□□ -0.74
SF3B1-203ENST00000414174 APLP2Q06481 763 aa10.23□□□□□ -0.77
SF3B1-203ENST00000414174 ZNF219Q9P2Y4 722 aaPredicted RBP10.2□□□□□ -0.78
SF3B1-203ENST00000414174 TRHP20396 242 aaPredicted RBP10.17□□□□□ -0.78
SF3B1-203ENST00000414174 SLC4A2P04920 1241 aa10.15□□□□□ -0.78
SF3B1-203ENST00000414174 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.12□□□□□ -0.79
SF3B1-203ENST00000414174 ABCB7O75027 752 aa10.12□□□□□ -0.79
SF3B1-203ENST00000414174 HNRNPUL2Q1KMD3 747 aaKnown RBP10.12□□□□□ -0.79
SF3B1-203ENST00000414174 RBM42Q9BTD8 480 aaKnown RBP10.08□□□□□ -0.8
SF3B1-203ENST00000414174 SAMD1Q6SPF0 538 aaPredicted RBP10.02□□□□□ -0.81
SF3B1-203ENST00000414174 CHRDL2Q6WN34 429 aa9.98□□□□□ -0.81
SF3B1-203ENST00000414174 KCNA4P22459 653 aa9.92□□□□□ -0.82
SF3B1-203ENST00000414174 POLA2Q14181 598 aa9.84□□□□□ -0.83
SF3B1-203ENST00000414174 SP7Q8TDD2 431 aaPredicted RBP9.84□□□□□ -0.83
SF3B1-203ENST00000414174 AKT1S1Q96B36 256 aa9.77□□□□□ -0.85
SF3B1-203ENST00000414174 MYCNP04198 464 aaPredicted RBP9.75□□□□□ -0.85
SF3B1-203ENST00000414174 PIP4P2Q8N4L2 257 aa9.66□□□□□ -0.86
SF3B1-203ENST00000414174 ZBTB12Q9Y330 459 aaPredicted RBP9.66□□□□□ -0.86
SF3B1-203ENST00000414174 REM2Q8IYK8 340 aaPredicted RBP9.65□□□□□ -0.86
SF3B1-203ENST00000414174 HAX1O00165 279 aa9.59□□□□□ -0.87
SF3B1-203ENST00000414174 FXR2P51116 673 aaKnown RBP eCLIP9.58□□□□□ -0.881e-7■■■□□ 16.1
SF3B1-203ENST00000414174 PITPNM1O00562 1244 aa9.51□□□□□ -0.89
SF3B1-203ENST00000414174 ATF5Q9Y2D1 282 aaPredicted RBP9.51□□□□□ -0.89
SF3B1-203ENST00000414174 OSCARQ8IYS5 282 aa9.49□□□□□ -0.89
SF3B1-203ENST00000414174 EVX2Q03828 476 aa9.42□□□□□ -0.9
SF3B1-203ENST00000414174 FOXD4L1Q9NU39 408 aa9.41□□□□□ -0.9
SF3B1-203ENST00000414174 SPDYE2BA6NHP3 402 aa9.31□□□□□ -0.92
SF3B1-203ENST00000414174 SPDYE6P0CI01 402 aa9.31□□□□□ -0.92
SF3B1-203ENST00000414174 SPDYE2Q495Y8 402 aa9.31□□□□□ -0.92
SF3B1-203ENST00000414174 SLC4A1APQ9BWU0 796 aaKnown RBP9.29□□□□□ -0.92
SF3B1-203ENST00000414174 C19orf67A6NJJ6 358 aa9.27□□□□□ -0.93
SF3B1-203ENST00000414174 PRKAR2AP13861 404 aaKnown RBP9.27□□□□□ -0.93
SF3B1-203ENST00000414174 ATXN8OSP0DMR3 200 aa9.25□□□□□ -0.93
SF3B1-203ENST00000414174 SPDYE1Q8NFV5 336 aaPredicted RBP9.24□□□□□ -0.93
SF3B1-203ENST00000414174 LHX8Q68G74 356 aa9.23□□□□□ -0.93
SF3B1-203ENST00000414174 GABBR2O75899 941 aa9.22□□□□□ -0.93
SF3B1-203ENST00000414174 FBLN2P98095 1184 aa9.22□□□□□ -0.93
SF3B1-203ENST00000414174 CLEC11AQ9Y240 323 aa9.18□□□□□ -0.94
SF3B1-203ENST00000414174 SSUH2Q9Y2M2 353 aa9.12□□□□□ -0.95
SF3B1-203ENST00000414174 ZNF692Q9BU19 519 aaPredicted RBP9.11□□□□□ -0.95
SF3B1-203ENST00000414174 ZBTB22O15209 634 aa9.09□□□□□ -0.95
SF3B1-203ENST00000414174 MKRN4PQ13434 485 aaPredicted RBP9.07□□□□□ -0.96
SF3B1-203ENST00000414174 CLCN6P51797 869 aa9.06□□□□□ -0.96
SF3B1-203ENST00000414174 PRR29P0C7W0 189 aa9.03□□□□□ -0.96
SF3B1-203ENST00000414174 CHADLQ6NUI6 762 aa9.03□□□□□ -0.96
SF3B1-203ENST00000414174 POTEIP0CG38 1075 aa9□□□□□ -0.97
SF3B1-203ENST00000414174 CD44P16070 742 aaKnown RBP8.94□□□□□ -0.98
SF3B1-203ENST00000414174 PABPN1Q86U42 306 aaKnown RBP eCLIP8.94□□□□□ -0.98
SF3B1-203ENST00000414174 FARP1Q9Y4F1 1045 aaPredicted RBP8.93□□□□□ -0.98
SF3B1-203ENST00000414174 PLSCR2Q9NRY7 297 aa8.9□□□□□ -0.98
SF3B1-203ENST00000414174 DCBLD2Q96PD2 775 aa8.88□□□□□ -0.99
SF3B1-203ENST00000414174 ZNF579Q8NAF0 562 aaKnown RBP8.83□□□□□ -1
SF3B1-203ENST00000414174 OTUD5Q96G74 571 aa8.76□□□□□ -1.01
SF3B1-203ENST00000414174 ZRANB1Q9UGI0 708 aa8.76□□□□□ -1.01
SF3B1-203ENST00000414174 GALR2O43603 387 aaPredicted RBP8.7□□□□□ -1.02
SF3B1-203ENST00000414174 CREBZFQ9NS37 354 aa8.7□□□□□ -1.02
SF3B1-203ENST00000414174 POTEB2H3BUK9 544 aa8.69□□□□□ -1.02
SF3B1-203ENST00000414174 PCDH10Q9P2E7 1040 aa8.69□□□□□ -1.02
SF3B1-203ENST00000414174 POTEMA6NI47 508 aa8.68□□□□□ -1.02
SF3B1-203ENST00000414174 STAG3Q9UJ98 1225 aa8.68□□□□□ -1.02
SF3B1-203ENST00000414174 POTEGQ6S5H5 508 aa8.64□□□□□ -1.03
SF3B1-203ENST00000414174 PAK3O75914 559 aaPredicted RBP8.62□□□□□ -1.03
SF3B1-203ENST00000414174 PELP1Q8IZL8 1130 aaKnown RBP8.59□□□□□ -1.03
SF3B1-203ENST00000414174 CSRNP3Q8WYN3 585 aa8.58□□□□□ -1.04
SF3B1-203ENST00000414174 PHF12Q96QT6 1004 aa8.57□□□□□ -1.04
SF3B1-203ENST00000414174 NPM1P06748 294 aaKnown RBP eCLIP8.56□□□□□ -1.04
SF3B1-203ENST00000414174 C7P10643 843 aa8.55□□□□□ -1.04
SF3B1-203ENST00000414174 MAMSTRQ6ZN01 415 aa8.55□□□□□ -1.04
SF3B1-203ENST00000414174 ASTLQ6HA08 431 aaPredicted RBP8.54□□□□□ -1.04
SF3B1-203ENST00000414174 SLC39A7Q92504 469 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms