Protein–RNA interactions for Protein: Q9BRG1

VPS25, Vacuolar protein-sorting-associated protein 25, humanhuman

Predictions only

Length 176 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25Q9BRG1 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
VPS25Q9BRG1 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC13.88□□□□□ -0.19
VPS25Q9BRG1 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
VPS25Q9BRG1 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
VPS25Q9BRG1 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
VPS25Q9BRG1 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
VPS25Q9BRG1 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
VPS25Q9BRG1 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
VPS25Q9BRG1 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
VPS25Q9BRG1 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
VPS25Q9BRG1 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
VPS25Q9BRG1 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
VPS25Q9BRG1 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
VPS25Q9BRG1 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
VPS25Q9BRG1 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
VPS25Q9BRG1 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC13.87□□□□□ -0.19
VPS25Q9BRG1 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
VPS25Q9BRG1 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
VPS25Q9BRG1 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC13.87□□□□□ -0.19
VPS25Q9BRG1 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
VPS25Q9BRG1 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
VPS25Q9BRG1 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
VPS25Q9BRG1 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC13.87□□□□□ -0.19
VPS25Q9BRG1 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC13.87□□□□□ -0.19
VPS25Q9BRG1 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
VPS25Q9BRG1 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC13.87□□□□□ -0.19
VPS25Q9BRG1 SUZ12P1-203ENST00000578195 985 ntBASIC13.87□□□□□ -0.19
VPS25Q9BRG1 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
VPS25Q9BRG1 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
VPS25Q9BRG1 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
VPS25Q9BRG1 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC13.87□□□□□ -0.19
VPS25Q9BRG1 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC13.87□□□□□ -0.19
VPS25Q9BRG1 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
VPS25Q9BRG1 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
VPS25Q9BRG1 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
VPS25Q9BRG1 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC13.87□□□□□ -0.19
VPS25Q9BRG1 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
VPS25Q9BRG1 HNRNPLP2-201ENST00000568980 1570 ntBASIC13.87□□□□□ -0.19
VPS25Q9BRG1 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
VPS25Q9BRG1 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
VPS25Q9BRG1 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
VPS25Q9BRG1 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
VPS25Q9BRG1 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
VPS25Q9BRG1 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC13.87□□□□□ -0.19
VPS25Q9BRG1 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC13.87□□□□□ -0.19
VPS25Q9BRG1 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
VPS25Q9BRG1 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
VPS25Q9BRG1 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
VPS25Q9BRG1 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
VPS25Q9BRG1 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC13.87□□□□□ -0.19
VPS25Q9BRG1 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
VPS25Q9BRG1 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS25Q9BRG1 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS25Q9BRG1 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS25Q9BRG1 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC13.86□□□□□ -0.19
VPS25Q9BRG1 AC135050.7-201ENST00000624508 2218 ntBASIC13.86□□□□□ -0.19
VPS25Q9BRG1 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC13.86□□□□□ -0.19
VPS25Q9BRG1 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC13.86□□□□□ -0.19
VPS25Q9BRG1 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
VPS25Q9BRG1 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC13.86□□□□□ -0.19
VPS25Q9BRG1 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS25Q9BRG1 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
VPS25Q9BRG1 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS25Q9BRG1 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS25Q9BRG1 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
VPS25Q9BRG1 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS25Q9BRG1 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS25Q9BRG1 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS25Q9BRG1 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS25Q9BRG1 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS25Q9BRG1 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS25Q9BRG1 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC13.86□□□□□ -0.19
VPS25Q9BRG1 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
VPS25Q9BRG1 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC13.86□□□□□ -0.19
VPS25Q9BRG1 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS25Q9BRG1 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS25Q9BRG1 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS25Q9BRG1 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
VPS25Q9BRG1 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC13.85□□□□□ -0.19
VPS25Q9BRG1 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
VPS25Q9BRG1 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
VPS25Q9BRG1 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
VPS25Q9BRG1 C8orf49-201ENST00000525043 1968 ntBASIC13.85□□□□□ -0.19
VPS25Q9BRG1 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
VPS25Q9BRG1 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
VPS25Q9BRG1 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
VPS25Q9BRG1 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
VPS25Q9BRG1 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
VPS25Q9BRG1 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
VPS25Q9BRG1 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC13.85□□□□□ -0.19
VPS25Q9BRG1 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC13.85□□□□□ -0.19
VPS25Q9BRG1 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
VPS25Q9BRG1 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
VPS25Q9BRG1 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
VPS25Q9BRG1 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
VPS25Q9BRG1 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
VPS25Q9BRG1 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
VPS25Q9BRG1 PWWP2AP1-201ENST00000429776 2273 ntBASIC13.85□□□□□ -0.19
VPS25Q9BRG1 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
VPS25Q9BRG1 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC13.85□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 67 ms