Protein–RNA interactions for Protein: P48412

UPF3, Nonsense-mediated mRNA decay protein 3, yeastyeast

Known RBP Predictions only

Length 387 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UPF3P48412 GIM4YEL003W 336 nt1.77□□□□□ -2.13
UPF3P48412 PRE4YFR050C 801 nt1.77□□□□□ -2.13
UPF3P48412 YHL046W-AYHL046W-A 327 nt1.77□□□□□ -2.13
UPF3P48412 tR(ACG)Q2tR(ACG)Q2 74 nt1.77□□□□□ -2.13
UPF3P48412 YHR210CYHR210C 1026 nt1.77□□□□□ -2.13
UPF3P48412 YMR272W-BYMR272W-B 108 nt1.77□□□□□ -2.13
UPF3P48412 YOP1YPR028W 543 nt1.77□□□□□ -2.13
UPF3P48412 VPS15YBR097W 4365 nt1.76□□□□□ -2.13
UPF3P48412 DGR2YKL121W 2559 nt1.76□□□□□ -2.13
UPF3P48412 SEC5YDR166C 2916 nt1.76□□□□□ -2.13
UPF3P48412 YDR003W-AYDR003W-A 123 nt1.76□□□□□ -2.13
UPF3P48412 SAS3YBL052C 2496 nt1.75□□□□□ -2.13
UPF3P48412 RFX1YLR176C 2436 nt1.75□□□□□ -2.13
UPF3P48412 RPL31AYDL075W 342 nt1.75□□□□□ -2.13
UPF3P48412 YAP6YDR259C 1152 nt1.75□□□□□ -2.13
UPF3P48412 Q0142Q0142 177 nt1.75□□□□□ -2.13
UPF3P48412 RTP1YMR185W 2946 nt1.75□□□□□ -2.13
UPF3P48412 RPL26AYLR344W 384 nt1.74□□□□□ -2.13
UPF3P48412 HCH1YNL281W 462 nt1.74□□□□□ -2.13
UPF3P48412 PEP1YBL017C 4740 nt1.74□□□□□ -2.13
UPF3P48412 ISF1YMR081C 1017 nt1.73□□□□□ -2.13
UPF3P48412 SPO24YPR036W-A 204 nt1.73□□□□□ -2.13
UPF3P48412 ATG31YDR022C 591 nt1.72□□□□□ -2.13
UPF3P48412 YOR029WYOR029W 336 nt1.72□□□□□ -2.13
UPF3P48412 YLR035C-AYLR035C-A 3468 nt1.72□□□□□ -2.13
UPF3P48412 BPH1YCR032W 6504 nt1.72□□□□□ -2.13
UPF3P48412 MUK1YPL070W 1839 nt1.71□□□□□ -2.14
UPF3P48412 EMC5YIL027C 426 nt1.71□□□□□ -2.14
UPF3P48412 YMR230W-AYMR230W-A 189 nt1.71□□□□□ -2.14
UPF3P48412 YOR121CYOR121C 306 nt1.71□□□□□ -2.14
UPF3P48412 DNF3YMR162C 4971 nt1.71□□□□□ -2.14
UPF3P48412 CYC7YEL039C 342 nt1.7□□□□□ -2.14
UPF3P48412 HIT1YJR055W 495 nt1.7□□□□□ -2.14
UPF3P48412 FIG2YCR089W 4830 nt1.69□□□□□ -2.14
UPF3P48412 SRP14YDL092W 441 nt1.69□□□□□ -2.14
UPF3P48412 SXM1YDR395W 2835 nt1.69□□□□□ -2.14
UPF3P48412 BST1YFL025C 3090 nt1.69□□□□□ -2.14
UPF3P48412 NCA2YPR155C 1851 nt1.69□□□□□ -2.14
UPF3P48412 YLL032CYLL032C 2478 nt1.68□□□□□ -2.14
UPF3P48412 PAU2YEL049W 363 nt1.68□□□□□ -2.14
UPF3P48412 YER137W-AYER137W-A 306 nt1.68□□□□□ -2.14
UPF3P48412 YHR052W-AYHR052W-A 195 nt1.68□□□□□ -2.14
UPF3P48412 YHR054W-AYHR054W-A 195 nt1.68□□□□□ -2.14
UPF3P48412 MRPL31YKL138C 396 nt1.68□□□□□ -2.14
UPF3P48412 YAL063C-AYAL063C-A 291 nt1.68□□□□□ -2.14
UPF3P48412 YNL058CYNL058C 951 nt1.68□□□□□ -2.14
UPF3P48412 YBR012CYBR012C 420 nt1.68□□□□□ -2.14
UPF3P48412 YLL054CYLL054C 2532 nt1.68□□□□□ -2.14
UPF3P48412 YDR524W-CYDR524W-C 90 nt1.67□□□□□ -2.14
UPF3P48412 RPB10YOR210W 213 nt1.67□□□□□ -2.14
UPF3P48412 RAD50YNL250W 3939 nt1.66□□□□□ -2.14
UPF3P48412 PIG1YLR273C 1947 nt1.66□□□□□ -2.14
UPF3P48412 YHL037CYHL037C 402 nt1.66□□□□□ -2.14
UPF3P48412 SDH2YLL041C 801 nt1.66□□□□□ -2.14
UPF3P48412 YLR140WYLR140W 327 nt1.66□□□□□ -2.14
UPF3P48412 NOC3YLR002C 1992 nt1.66□□□□□ -2.14
UPF3P48412 YJR003CYJR003C 1560 nt1.65□□□□□ -2.15
UPF3P48412 YHL041WYHL041W 450 nt1.65□□□□□ -2.15
UPF3P48412 YOR376WYOR376W 369 nt1.65□□□□□ -2.15
UPF3P48412 NUT2YPR168W 474 nt1.65□□□□□ -2.15
UPF3P48412 UFD2YDL190C 2886 nt1.65□□□□□ -2.15
UPF3P48412 SGO1YOR073W 1773 nt1.64□□□□□ -2.15
UPF3P48412 TBS1YBR150C 3285 nt1.64□□□□□ -2.15
UPF3P48412 COF1YLL050C 432 nt1.64□□□□□ -2.15
UPF3P48412 YOL159C-AYOL159C-A 273 nt1.64□□□□□ -2.15
UPF3P48412 IRC23YOR044W 474 nt1.64□□□□□ -2.15
UPF3P48412 MVP1YMR004W 1536 nt1.63□□□□□ -2.15
UPF3P48412 YJL022WYJL022W 309 nt1.63□□□□□ -2.15
UPF3P48412 UPS1YLR193C 528 nt1.63□□□□□ -2.15
UPF3P48412 KIP1YBL063W 3336 nt1.63□□□□□ -2.15
UPF3P48412 AI5_ALPHAQ0070 1893 nt1.63□□□□□ -2.15
UPF3P48412 MON2YNL297C 4911 nt1.62□□□□□ -2.15
UPF3P48412 YOR108C-AYOR108C-A 210 nt1.62□□□□□ -2.15
UPF3P48412 TIM18YOR297C 579 nt1.62□□□□□ -2.15
UPF3P48412 SMC4YLR086W 4257 nt1.62□□□□□ -2.15
UPF3P48412 YPR197CYPR197C 564 nt1.61□□□□□ -2.15
UPF3P48412 snR51snR51 107 nt1.61□□□□□ -2.15
UPF3P48412 BRR2YER172C 6492 nt1.61□□□□□ -2.15
UPF3P48412 ALK1YGL021W 2283 nt1.6□□□□□ -2.15
UPF3P48412 ZIP2YGL249W 2115 nt1.6□□□□□ -2.15
UPF3P48412 VPS54YDR027C 2670 nt1.6□□□□□ -2.15
UPF3P48412 YGR035CYGR035C 351 nt1.6□□□□□ -2.15
UPF3P48412 RPL40BYKR094C 387 nt1.6□□□□□ -2.15
UPF3P48412 IRA1YBR140C 9279 nt1.6□□□□□ -2.15
UPF3P48412 AIM44YPL158C 2277 nt1.6□□□□□ -2.15
UPF3P48412 APL2YKL135C 2181 nt1.59□□□□□ -2.15
UPF3P48412 YLR422WYLR422W 5799 nt1.59□□□□□ -2.15
UPF3P48412 CFT1YDR301W 4074 nt1.59□□□□□ -2.15
UPF3P48412 ADR1YDR216W 3972 nt1.59□□□□□ -2.15
UPF3P48412 PAC1YOR269W 1485 nt1.59□□□□□ -2.15
UPF3P48412 KCS1YDR017C 3153 nt1.59□□□□□ -2.15
UPF3P48412 YAR053WYAR053W 297 nt1.59□□□□□ -2.15
UPF3P48412 YOR072W-AYOR072W-A 249 nt1.59□□□□□ -2.15
UPF3P48412 YGR109W-BYGR109W-B 4644 nt1.58□□□□□ -2.16
UPF3P48412 SLX4YLR135W 2247 nt1.58□□□□□ -2.16
UPF3P48412 YGL217CYGL217C 342 nt1.58□□□□□ -2.16
UPF3P48412 YJL015CYJL015C 285 nt1.58□□□□□ -2.16
UPF3P48412 VPS55YJR044C 423 nt1.58□□□□□ -2.16
UPF3P48412 YMR242W-AYMR242W-A 90 nt1.58□□□□□ -2.16
UPF3P48412 BIL1YOR304C-A 231 nt1.58□□□□□ -2.16
Retrieved 100 of 7,029 protein–RNA pairs in 60.3 ms