Protein–RNA interactions for Protein: P34223

SHP1, UBX domain-containing protein 1, yeastyeast

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SHP1P34223 HIR3YJR140C 4947 nt1.78□□□□□ -2.13
SHP1P34223 TFC8YPL007C 1767 nt1.77□□□□□ -2.13
SHP1P34223 HSL1YKL101W 4557 nt1.77□□□□□ -2.13
SHP1P34223 TIM18YOR297C 579 nt1.77□□□□□ -2.13
SHP1P34223 YPL225WYPL225W 441 nt1.77□□□□□ -2.13
SHP1P34223 MSC6YOR354C 2079 nt1.76□□□□□ -2.13
SHP1P34223 SBE22YHR103W 2559 nt1.76□□□□□ -2.13
SHP1P34223 YOR093CYOR093C 4947 nt1.76□□□□□ -2.13
SHP1P34223 FMP23YBR047W 528 nt1.76□□□□□ -2.13
SHP1P34223 RTP1YMR185W 2946 nt1.76□□□□□ -2.13
SHP1P34223 EFR3YMR212C 2349 nt1.75□□□□□ -2.13
SHP1P34223 MYO4YAL029C 4416 nt1.75□□□□□ -2.13
SHP1P34223 ZRG17YNR039C 1818 nt1.75□□□□□ -2.13
SHP1P34223 SGO1YOR073W 1773 nt1.75□□□□□ -2.13
SHP1P34223 LRE1YCL051W 1752 nt1.75□□□□□ -2.13
SHP1P34223 CYC7YEL039C 342 nt1.75□□□□□ -2.13
SHP1P34223 ABM1YJR108W 372 nt1.75□□□□□ -2.13
SHP1P34223 YGR250CYGR250C 2346 nt1.75□□□□□ -2.13
SHP1P34223 CFT2YLR115W 2580 nt1.75□□□□□ -2.13
SHP1P34223 SEY1YOR165W 2331 nt1.74□□□□□ -2.13
SHP1P34223 SWI6YLR182W 2412 nt1.74□□□□□ -2.13
SHP1P34223 YGR265WYGR265W 411 nt1.74□□□□□ -2.13
SHP1P34223 YMR141W-AYMR141W-A 225 nt1.74□□□□□ -2.13
SHP1P34223 SAR1YPL218W 573 nt1.74□□□□□ -2.13
SHP1P34223 NUT2YPR168W 474 nt1.74□□□□□ -2.13
SHP1P34223 LYS14YDR034C 2373 nt1.74□□□□□ -2.13
SHP1P34223 YBP1YBR216C 2025 nt1.74□□□□□ -2.13
SHP1P34223 BPH1YCR032W 6504 nt1.74□□□□□ -2.13
SHP1P34223 HCS1YKL017C 2052 nt1.73□□□□□ -2.13
SHP1P34223 RKM1YPL208W 1752 nt1.73□□□□□ -2.13
SHP1P34223 CSN9YDR179C 489 nt1.73□□□□□ -2.13
SHP1P34223 RPL40BYKR094C 387 nt1.73□□□□□ -2.13
SHP1P34223 UPS1YLR193C 528 nt1.73□□□□□ -2.13
SHP1P34223 MGA2YIR033W 3342 nt1.73□□□□□ -2.13
SHP1P34223 YDR003W-AYDR003W-A 123 nt1.72□□□□□ -2.13
SHP1P34223 YDR102CYDR102C 333 nt1.72□□□□□ -2.13
SHP1P34223 PFD1YJL179W 330 nt1.72□□□□□ -2.13
SHP1P34223 RFX1YLR176C 2436 nt1.71□□□□□ -2.14
SHP1P34223 MSH5YDL154W 2706 nt1.71□□□□□ -2.14
SHP1P34223 CTR9YOL145C 3234 nt1.71□□□□□ -2.14
SHP1P34223 YOP1YPR028W 543 nt1.71□□□□□ -2.14
SHP1P34223 BRR2YER172C 6492 nt1.71□□□□□ -2.14
SHP1P34223 RLM1YPL089C 2031 nt1.71□□□□□ -2.14
SHP1P34223 UTP21YLR409C 2820 nt1.71□□□□□ -2.14
SHP1P34223 SEC63YOR254C 1992 nt1.7□□□□□ -2.14
SHP1P34223 GCN2YDR283C 4980 nt1.7□□□□□ -2.14
SHP1P34223 YHR214C-BYHR214C-B 5382 nt1.7□□□□□ -2.14
SHP1P34223 YKL136WYKL136W 399 nt1.7□□□□□ -2.14
SHP1P34223 SAC3YDR159W 3906 nt1.7□□□□□ -2.14
SHP1P34223 IRE1YHR079C 3348 nt1.7□□□□□ -2.14
SHP1P34223 CAT8YMR280C 4302 nt1.7□□□□□ -2.14
SHP1P34223 MSH6YDR097C 3729 nt1.69□□□□□ -2.14
SHP1P34223 MAK10YEL053C 2202 nt1.69□□□□□ -2.14
SHP1P34223 RPL35AYDL191W 363 nt1.69□□□□□ -2.14
SHP1P34223 tT(UGU)HtT(UGU)H 72 nt1.69□□□□□ -2.14
SHP1P34223 TMA7YLR262C-A 195 nt1.69□□□□□ -2.14
SHP1P34223 RPL38YLR325C 237 nt1.69□□□□□ -2.14
SHP1P34223 MUK1YPL070W 1839 nt1.68□□□□□ -2.14
SHP1P34223 YJR039WYJR039W 3366 nt1.68□□□□□ -2.14
SHP1P34223 MVP1YMR004W 1536 nt1.68□□□□□ -2.14
SHP1P34223 YHR007C-AYHR007C-A 216 nt1.68□□□□□ -2.14
SHP1P34223 YJR011CYJR011C 786 nt1.68□□□□□ -2.14
SHP1P34223 YKL118WYKL118W 312 nt1.68□□□□□ -2.14
SHP1P34223 TRX1YLR043C 312 nt1.68□□□□□ -2.14
SHP1P34223 DCP2YNL118C 2913 nt1.68□□□□□ -2.14
SHP1P34223 ZIP1YDR285W 2628 nt1.68□□□□□ -2.14
SHP1P34223 MYO2YOR326W 4725 nt1.67□□□□□ -2.14
SHP1P34223 SRP14YDL092W 441 nt1.67□□□□□ -2.14
SHP1P34223 NHP2YDL208W 471 nt1.67□□□□□ -2.14
SHP1P34223 snR51snR51 107 nt1.67□□□□□ -2.14
SHP1P34223 SLY1YDR189W 2001 nt1.66□□□□□ -2.14
SHP1P34223 YIL102CYIL102C 306 nt1.66□□□□□ -2.14
SHP1P34223 RIM20YOR275C 1986 nt1.66□□□□□ -2.14
SHP1P34223 YLL032CYLL032C 2478 nt1.66□□□□□ -2.14
SHP1P34223 YLR419WYLR419W 4308 nt1.65□□□□□ -2.15
SHP1P34223 YML007C-AYML007C-A 111 nt1.65□□□□□ -2.15
SHP1P34223 YMR247W-AYMR247W-A 144 nt1.65□□□□□ -2.15
SHP1P34223 LHS1YKL073W 2646 nt1.65□□□□□ -2.15
SHP1P34223 HMI1YOL095C 2121 nt1.64□□□□□ -2.15
SHP1P34223 MDM20YOL076W 2391 nt1.64□□□□□ -2.15
SHP1P34223 YDR413CYDR413C 576 nt1.64□□□□□ -2.15
SHP1P34223 RPB10YOR210W 213 nt1.64□□□□□ -2.15
SHP1P34223 snR36snR36 182 nt1.64□□□□□ -2.15
SHP1P34223 TBS1YBR150C 3285 nt1.64□□□□□ -2.15
SHP1P34223 FRK1YPL141C 2598 nt1.63□□□□□ -2.15
SHP1P34223 PKH3YDR466W 2697 nt1.63□□□□□ -2.15
SHP1P34223 YER097WYER097W 330 nt1.63□□□□□ -2.15
SHP1P34223 TAR1YLR154W-C 375 nt1.63□□□□□ -2.15
SHP1P34223 HTB2YBL002W 396 nt1.63□□□□□ -2.15
SHP1P34223 HUG1YML058W-A 207 nt1.63□□□□□ -2.15
SHP1P34223 YSY6YBR162W-A 198 nt1.63□□□□□ -2.15
SHP1P34223 YNL144CYNL144C 2223 nt1.63□□□□□ -2.15
SHP1P34223 MLH3YPL164C 2148 nt1.63□□□□□ -2.15
SHP1P34223 MON2YNL297C 4911 nt1.62□□□□□ -2.15
SHP1P34223 snR72snR72 98 nt1.62□□□□□ -2.15
SHP1P34223 YDR169C-AYDR169C-A 150 nt1.62□□□□□ -2.15
SHP1P34223 YFL032WYFL032W 321 nt1.62□□□□□ -2.15
SHP1P34223 PCC1YKR095W-A 267 nt1.62□□□□□ -2.15
SHP1P34223 INP2YMR163C 2118 nt1.62□□□□□ -2.15
SHP1P34223 YNL146WYNL146W 303 nt1.62□□□□□ -2.15
Retrieved 100 of 7,029 protein–RNA pairs in 29.1 ms