Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 MYCNOS-205ENST00000641950 531 ntBASIC19.44■□□□□ 0.7
LSM1O15116 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
LSM1O15116 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.44■□□□□ 0.7
LSM1O15116 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LSM1O15116 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LSM1O15116 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LSM1O15116 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.44■□□□□ 0.7
LSM1O15116 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
LSM1O15116 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LSM1O15116 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC19.44■□□□□ 0.7
LSM1O15116 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LSM1O15116 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.44■□□□□ 0.7
LSM1O15116 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.44■□□□□ 0.7
LSM1O15116 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.44■□□□□ 0.7
LSM1O15116 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LSM1O15116 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LSM1O15116 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.43■□□□□ 0.7
LSM1O15116 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.43■□□□□ 0.7
LSM1O15116 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
LSM1O15116 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LSM1O15116 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LSM1O15116 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
LSM1O15116 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
LSM1O15116 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LSM1O15116 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
LSM1O15116 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.43■□□□□ 0.7
LSM1O15116 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LSM1O15116 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
LSM1O15116 LGR4-203ENST00000480977 492 ntTSL 2 BASIC19.43■□□□□ 0.7
LSM1O15116 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
LSM1O15116 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC19.43■□□□□ 0.7
LSM1O15116 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LSM1O15116 AC125437.2-201ENST00000625180 2167 ntBASIC19.43■□□□□ 0.7
LSM1O15116 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
LSM1O15116 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
LSM1O15116 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC19.43■□□□□ 0.7
LSM1O15116 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LSM1O15116 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
LSM1O15116 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LSM1O15116 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LSM1O15116 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LSM1O15116 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LSM1O15116 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LSM1O15116 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LSM1O15116 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LSM1O15116 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LSM1O15116 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.42■□□□□ 0.7
LSM1O15116 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
LSM1O15116 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
LSM1O15116 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.42■□□□□ 0.7
LSM1O15116 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.42■□□□□ 0.7
LSM1O15116 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LSM1O15116 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LSM1O15116 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LSM1O15116 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LSM1O15116 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
LSM1O15116 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
LSM1O15116 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.41■□□□□ 0.7
LSM1O15116 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LSM1O15116 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LSM1O15116 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LSM1O15116 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LSM1O15116 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LSM1O15116 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LSM1O15116 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LSM1O15116 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LSM1O15116 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
LSM1O15116 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LSM1O15116 GUK1-205ENST00000366722 850 ntTSL 3 BASIC19.41■□□□□ 0.7
LSM1O15116 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.41■□□□□ 0.7
LSM1O15116 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC19.41■□□□□ 0.7
LSM1O15116 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
LSM1O15116 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.41■□□□□ 0.7
LSM1O15116 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.41■□□□□ 0.7
LSM1O15116 AC097381.1-201ENST00000429019 1296 ntBASIC19.41■□□□□ 0.7
LSM1O15116 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LSM1O15116 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.41■□□□□ 0.7
LSM1O15116 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LSM1O15116 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
LSM1O15116 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LSM1O15116 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
LSM1O15116 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
LSM1O15116 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
LSM1O15116 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
LSM1O15116 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.41■□□□□ 0.7
LSM1O15116 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.41■□□□□ 0.7
LSM1O15116 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LSM1O15116 AC026471.1-201ENST00000564629 3026 ntBASIC19.4■□□□□ 0.7
LSM1O15116 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
LSM1O15116 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
LSM1O15116 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.4■□□□□ 0.7
LSM1O15116 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC19.4■□□□□ 0.7
LSM1O15116 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LSM1O15116 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LSM1O15116 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LSM1O15116 AL691432.2-201ENST00000607222 2038 ntBASIC19.4■□□□□ 0.7
LSM1O15116 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LSM1O15116 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.4■□□□□ 0.7
LSM1O15116 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LSM1O15116 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms