RNA–Protein interactions for RNA: ENST00000394331.3

HOXC6-202, Transcript of homeobox C6, humanhuman

TSL 1 (best) BASIC

Gene HOXC6, Length 2,943 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC6-202ENST00000394331 NISCHQ9Y2I1 1504 aa38.08■■■■□ 3.69
HOXC6-202ENST00000394331 CCDC180Q9P1Z9 1646 aa32.49■■■□□ 2.79
HOXC6-202ENST00000394331 ZCCHC6Q5VYS8 1495 aaKnown RBP32.2■■■□□ 2.75
HOXC6-202ENST00000394331 SHROOM4Q9ULL8 1493 aa32.14■■■□□ 2.74
HOXC6-202ENST00000394331 HRCP23327 699 aa31.87■■■□□ 2.69
HOXC6-202ENST00000394331 PELP1Q8IZL8 1130 aaKnown RBP31.63■■■□□ 2.65
HOXC6-202ENST00000394331 SUPT5HO00267 1087 aaKnown RBP31.55■■■□□ 2.64
HOXC6-202ENST00000394331 DCAF8L2P0C7V8 631 aa31.4■■■□□ 2.62
HOXC6-202ENST00000394331 DCAF1Q9Y4B6 1507 aa31.39■■■□□ 2.62
HOXC6-202ENST00000394331 CHIC1Q5VXU3 224 aa30.73■■■□□ 2.51
HOXC6-202ENST00000394331 PPARGC1BQ86YN6 1023 aaKnown RBP30.73■■■□□ 2.51
HOXC6-202ENST00000394331 PCGF6Q9BYE7 350 aa30.69■■■□□ 2.5
HOXC6-202ENST00000394331 MYT1Q01538 1121 aa30.66■■■□□ 2.5
HOXC6-202ENST00000394331 MYO15BQ96JP2 1530 aa30.63■■■□□ 2.49
HOXC6-202ENST00000394331 ABCC9O60706 1549 aa30.34■■■□□ 2.45
HOXC6-202ENST00000394331 SCRIBQ14160 1630 aa30.24■■■□□ 2.43
HOXC6-202ENST00000394331 SCAF1Q9H7N4 1312 aaKnown RBP30.19■■■□□ 2.42
HOXC6-202ENST00000394331 NACADO15069 1562 aa30.08■■■□□ 2.41
HOXC6-202ENST00000394331 RSF1Q96T23 1441 aaPredicted RBP30.07■■■□□ 2.4
HOXC6-202ENST00000394331 ZEB1P37275 1124 aaPredicted RBP30.05■■■□□ 2.4
HOXC6-202ENST00000394331 TRIM26Q12899 539 aaPredicted RBP29.95■■■□□ 2.39
HOXC6-202ENST00000394331 RB1CC1Q8TDY2 1594 aa29.76■■■□□ 2.36
HOXC6-202ENST00000394331 LOC105371045A0A1W2PR82 267 aa29.68■■■□□ 2.34
HOXC6-202ENST00000394331 CECR2Q9BXF3 1484 aa29.59■■■□□ 2.33
HOXC6-202ENST00000394331 MROH2BQ7Z745 1585 aa29.52■■■□□ 2.32
HOXC6-202ENST00000394331 TRIM41Q8WV44 630 aa29.51■■■□□ 2.32
HOXC6-202ENST00000394331 ACIN1Q9UKV3 1341 aaKnown RBP29.47■■■□□ 2.31
HOXC6-202ENST00000394331 WIZO95785 1651 aa29.31■■■□□ 2.28
HOXC6-202ENST00000394331 BAZ1AQ9NRL2 1556 aaPredicted RBP29.29■■■□□ 2.28
HOXC6-202ENST00000394331 NEUROD1Q13562 356 aa29.2■■■□□ 2.26
HOXC6-202ENST00000394331 FAM9AQ8IZU1 332 aaPredicted RBP29.1■■■□□ 2.25
HOXC6-202ENST00000394331 CENPBP07199 599 aaPredicted RBP29.1■■■□□ 2.25
HOXC6-202ENST00000394331 GTF3C3Q9Y5Q9 886 aa29.07■■■□□ 2.24
HOXC6-202ENST00000394331 SMARCA4P51532 1647 aa28.99■■■□□ 2.23
HOXC6-202ENST00000394331 TTBK1Q5TCY1 1321 aaPredicted RBP28.99■■■□□ 2.23
HOXC6-202ENST00000394331 TOP2AP11388 1531 aaKnown RBP28.99■■■□□ 2.23
HOXC6-202ENST00000394331 EIF4G1Q04637 1599 aaKnown RBP28.95■■■□□ 2.22
HOXC6-202ENST00000394331 UNC13AQ9UPW8 1703 aa28.94■■■□□ 2.22
HOXC6-202ENST00000394331 CCDC88BA6NC98 1476 aa28.81■■■□□ 2.2
HOXC6-202ENST00000394331 SMARCA2P51531 1590 aa28.77■■■□□ 2.2
HOXC6-202ENST00000394331 EHMT2Q96KQ7 1210 aa28.72■■■□□ 2.19
HOXC6-202ENST00000394331 DIEXFQ68CQ4 756 aaKnown RBP28.67■■■□□ 2.18
HOXC6-202ENST00000394331 BICRAQ9NZM4 1560 aa28.67■■■□□ 2.18
HOXC6-202ENST00000394331 PABPN1Q86U42 306 aaKnown RBP eCLIP28.61■■■□□ 2.17
HOXC6-202ENST00000394331 ABCC8Q09428 1581 aa28.59■■■□□ 2.17
HOXC6-202ENST00000394331 PEG3Q9GZU2 1588 aa28.53■■■□□ 2.16
HOXC6-202ENST00000394331 EEA1Q15075 1411 aa28.44■■■□□ 2.14
HOXC6-202ENST00000394331 CCER1Q8TC90 406 aaPredicted RBP28.36■■■□□ 2.13
HOXC6-202ENST00000394331 SOGA1O94964 1423 aa28.35■■■□□ 2.13
HOXC6-202ENST00000394331 CSRNP3Q8WYN3 585 aa28.3■■■□□ 2.12
HOXC6-202ENST00000394331 TNIKQ9UKE5 1360 aa28.29■■■□□ 2.12
HOXC6-202ENST00000394331 ATAD2BQ9ULI0 1458 aa28.29■■■□□ 2.12
HOXC6-202ENST00000394331 WRNQ14191 1432 aaPredicted RBP eCLIP28.29■■■□□ 2.12
HOXC6-202ENST00000394331 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.28■■■□□ 2.12
HOXC6-202ENST00000394331 CEP162Q5TB80 1403 aa28.24■■■□□ 2.11
HOXC6-202ENST00000394331 BAZ1BQ9UIG0 1483 aaKnown RBP28.21■■■□□ 2.11
HOXC6-202ENST00000394331 RUSC2Q8N2Y8 1516 aa28.16■■■□□ 2.1
HOXC6-202ENST00000394331 CLSPNQ9HAW4 1339 aa28.16■■■□□ 2.1
HOXC6-202ENST00000394331 GOLGA3Q08378 1498 aa28.13■■■□□ 2.09
HOXC6-202ENST00000394331 ZNF316A6NFI3 1004 aaPredicted RBP28.13■■■□□ 2.09
HOXC6-202ENST00000394331 BCL11AQ9H165 835 aa28.12■■■□□ 2.09
HOXC6-202ENST00000394331 UBTFP17480 764 aaKnown RBP28.11■■■□□ 2.09
HOXC6-202ENST00000394331 SYNJ1O43426 1573 aa28.05■■■□□ 2.08
HOXC6-202ENST00000394331 ANP32EQ9BTT0 268 aa28.03■■■□□ 2.08
HOXC6-202ENST00000394331 CEP164Q9UPV0 1460 aa28■■■□□ 2.07
HOXC6-202ENST00000394331 KIF21BO75037 1637 aa27.94■■■□□ 2.06
HOXC6-202ENST00000394331 YTHDC1Q96MU7 727 aaKnown RBP27.89■■■□□ 2.06
HOXC6-202ENST00000394331 NCAPD3P42695 1498 aa27.83■■■□□ 2.05
HOXC6-202ENST00000394331 MIER1Q8N108 512 aa27.82■■■□□ 2.04
HOXC6-202ENST00000394331 HMGXB3Q12766 1538 aa27.81■■■□□ 2.04
HOXC6-202ENST00000394331 TOP2BQ02880 1626 aa27.8■■■□□ 2.04
HOXC6-202ENST00000394331 CLIP1P30622 1438 aa27.77■■■□□ 2.04
HOXC6-202ENST00000394331 SUPT16HQ9Y5B9 1047 aaKnown RBP27.71■■■□□ 2.03
HOXC6-202ENST00000394331 BIVM-ERCC5R4GMW8 1640 aa27.7■■■□□ 2.02
HOXC6-202ENST00000394331 RAPGEF2Q9Y4G8 1499 aa27.69■■■□□ 2.02
HOXC6-202ENST00000394331 TSHZ2Q9NRE2 1034 aa27.69■■■□□ 2.02
HOXC6-202ENST00000394331 VPS8Q8N3P4 1428 aa27.66■■■□□ 2.02
HOXC6-202ENST00000394331 APLP2Q06481 763 aa27.56■■■□□ 2
HOXC6-202ENST00000394331 ERICH3Q5RHP9 1530 aa27.55■■■□□ 2
HOXC6-202ENST00000394331 CFTRP13569 1480 aa27.55■■■□□ 2
HOXC6-202ENST00000394331 PRXQ9BXM0 1461 aa27.53■■■□□ 2
HOXC6-202ENST00000394331 CUX1P39880 1505 aa27.5■■□□□ 1.99
HOXC6-202ENST00000394331 KIF27Q86VH2 1401 aa27.45■■□□□ 1.99
HOXC6-202ENST00000394331 RANGAP1P46060 587 aaPredicted RBP27.38■■□□□ 1.97
HOXC6-202ENST00000394331 HNRNPUL2Q1KMD3 747 aaKnown RBP27.35■■□□□ 1.97
HOXC6-202ENST00000394331 ARAP1Q96P48 1450 aa27.29■■□□□ 1.96
HOXC6-202ENST00000394331 PRDM2Q13029 1718 aa27.26■■□□□ 1.95
HOXC6-202ENST00000394331 CADPSQ9ULU8 1353 aa27.26■■□□□ 1.95
HOXC6-202ENST00000394331 PRKCSHP14314 528 aaPredicted RBP27.22■■□□□ 1.95
HOXC6-202ENST00000394331 CUX2O14529 1486 aa27.13■■□□□ 1.93
HOXC6-202ENST00000394331 IGF1RP08069 1367 aa27.11■■□□□ 1.93
HOXC6-202ENST00000394331 ARHGAP35Q9NRY4 1499 aa27.09■■□□□ 1.93
HOXC6-202ENST00000394331 KANK4Q5T7N3 995 aaPredicted RBP27.08■■□□□ 1.93
HOXC6-202ENST00000394331 FGD5Q6ZNL6 1462 aa27.04■■□□□ 1.92
HOXC6-202ENST00000394331 CC2D2AQ9P2K1 1620 aa27.04■■□□□ 1.92
HOXC6-202ENST00000394331 RRBP1Q9P2E9 1410 aaKnown RBP27.02■■□□□ 1.92
HOXC6-202ENST00000394331 CARMIL1Q5VZK9 1371 aa27.01■■□□□ 1.91
HOXC6-202ENST00000394331 ERICH6Q7L0X2 663 aa26.99■■□□□ 1.91
HOXC6-202ENST00000394331 RBM19Q9Y4C8 960 aaKnown RBP26.98■■□□□ 1.91
HOXC6-202ENST00000394331 FANCD2Q9BXW9 1451 aa26.95■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms