RNA–Protein interactions for RNA: ENST00000371748.9

LHX3-202, Transcript of LIM homeobox 3, humanhuman

TSL 1 (best) BASIC

Gene LHX3, Length 2,365 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3-202ENST00000371748 NISCHQ9Y2I1 1504 aa43.35■■■■■ 4.53
LHX3-202ENST00000371748 CCDC180Q9P1Z9 1646 aa37.39■■■■□ 3.58
LHX3-202ENST00000371748 ZCCHC6Q5VYS8 1495 aaKnown RBP36.53■■■■□ 3.44
LHX3-202ENST00000371748 SHROOM4Q9ULL8 1493 aa36.13■■■■□ 3.37
LHX3-202ENST00000371748 DCAF8L2P0C7V8 631 aa35.91■■■■□ 3.34
LHX3-202ENST00000371748 DCAF1Q9Y4B6 1507 aa35.67■■■■□ 3.3
LHX3-202ENST00000371748 ABCC9O60706 1549 aa35.09■■■■□ 3.21
LHX3-202ENST00000371748 SUPT5HO00267 1087 aaKnown RBP35.05■■■■□ 3.2
LHX3-202ENST00000371748 MYO15BQ96JP2 1530 aa34.97■■■■□ 3.19
LHX3-202ENST00000371748 SCRIBQ14160 1630 aa34.73■■■■□ 3.15
LHX3-202ENST00000371748 NACADO15069 1562 aa34.69■■■■□ 3.14
LHX3-202ENST00000371748 RB1CC1Q8TDY2 1594 aa34.29■■■■□ 3.08
LHX3-202ENST00000371748 RSF1Q96T23 1441 aaPredicted RBP33.93■■■■□ 3.02
LHX3-202ENST00000371748 UNC13AQ9UPW8 1703 aa33.78■■■■□ 3
LHX3-202ENST00000371748 CECR2Q9BXF3 1484 aa33.78■■■■□ 3
LHX3-202ENST00000371748 CHIC1Q5VXU3 224 aa33.75■■■□□ 2.99
LHX3-202ENST00000371748 MROH2BQ7Z745 1585 aa33.61■■■□□ 2.97
LHX3-202ENST00000371748 WIZO95785 1651 aa33.41■■■□□ 2.94
LHX3-202ENST00000371748 BAZ1AQ9NRL2 1556 aaPredicted RBP33.39■■■□□ 2.94
LHX3-202ENST00000371748 BICRAQ9NZM4 1560 aa33.34■■■□□ 2.93
LHX3-202ENST00000371748 PABPN1Q86U42 306 aaKnown RBP eCLIP33.29■■■□□ 2.92
LHX3-202ENST00000371748 SMARCA4P51532 1647 aa33.21■■■□□ 2.91
LHX3-202ENST00000371748 TOP2AP11388 1531 aaKnown RBP32.93■■■□□ 2.86
LHX3-202ENST00000371748 TRIM41Q8WV44 630 aa32.77■■■□□ 2.84
LHX3-202ENST00000371748 SMARCA2P51531 1590 aa32.71■■■□□ 2.83
LHX3-202ENST00000371748 CCDC88BA6NC98 1476 aa32.7■■■□□ 2.82
LHX3-202ENST00000371748 EIF4G1Q04637 1599 aaKnown RBP32.67■■■□□ 2.82
LHX3-202ENST00000371748 PEG3Q9GZU2 1588 aa32.67■■■□□ 2.82
LHX3-202ENST00000371748 LOC105371045A0A1W2PR82 267 aa32.63■■■□□ 2.81
LHX3-202ENST00000371748 ATAD2BQ9ULI0 1458 aa32.51■■■□□ 2.79
LHX3-202ENST00000371748 FAM9AQ8IZU1 332 aaPredicted RBP32.38■■■□□ 2.77
LHX3-202ENST00000371748 BAZ1BQ9UIG0 1483 aaKnown RBP32.38■■■□□ 2.77
LHX3-202ENST00000371748 ABCC8Q09428 1581 aa32.32■■■□□ 2.76
LHX3-202ENST00000371748 NCAPD3P42695 1498 aa32.05■■■□□ 2.72
LHX3-202ENST00000371748 EHMT2Q96KQ7 1210 aa32.04■■■□□ 2.72
LHX3-202ENST00000371748 HMGXB3Q12766 1538 aa32.04■■■□□ 2.72
LHX3-202ENST00000371748 WRNQ14191 1432 aaPredicted RBP eCLIP31.9■■■□□ 2.7
LHX3-202ENST00000371748 SOGA1O94964 1423 aa31.82■■■□□ 2.68
LHX3-202ENST00000371748 SYNJ1O43426 1573 aa31.8■■■□□ 2.68
LHX3-202ENST00000371748 PCGF6Q9BYE7 350 aa31.78■■■□□ 2.68
LHX3-202ENST00000371748 HRCP23327 699 aa31.72■■■□□ 2.67
LHX3-202ENST00000371748 RUSC2Q8N2Y8 1516 aa31.71■■■□□ 2.67
LHX3-202ENST00000371748 CC2D2AQ9P2K1 1620 aa31.69■■■□□ 2.66
LHX3-202ENST00000371748 EEA1Q15075 1411 aa31.64■■■□□ 2.66
LHX3-202ENST00000371748 CSRNP3Q8WYN3 585 aa31.57■■■□□ 2.64
LHX3-202ENST00000371748 CFTRP13569 1480 aa31.55■■■□□ 2.64
LHX3-202ENST00000371748 TOP2BQ02880 1626 aa31.53■■■□□ 2.64
LHX3-202ENST00000371748 BIVM-ERCC5R4GMW8 1640 aa31.47■■■□□ 2.63
LHX3-202ENST00000371748 TRIM26Q12899 539 aaPredicted RBP31.46■■■□□ 2.63
LHX3-202ENST00000371748 PRDM2Q13029 1718 aa31.41■■■□□ 2.62
LHX3-202ENST00000371748 CUX1P39880 1505 aa31.36■■■□□ 2.61
LHX3-202ENST00000371748 TNIKQ9UKE5 1360 aa31.35■■■□□ 2.61
LHX3-202ENST00000371748 GOLGA3Q08378 1498 aa31.35■■■□□ 2.61
LHX3-202ENST00000371748 CADPSQ9ULU8 1353 aa31.33■■■□□ 2.61
LHX3-202ENST00000371748 UBTFP17480 764 aaKnown RBP31.32■■■□□ 2.6
LHX3-202ENST00000371748 CEP162Q5TB80 1403 aa31.31■■■□□ 2.6
LHX3-202ENST00000371748 KIF21BO75037 1637 aa31.27■■■□□ 2.6
LHX3-202ENST00000371748 CEP164Q9UPV0 1460 aa31.27■■■□□ 2.6
LHX3-202ENST00000371748 PPARGC1BQ86YN6 1023 aaKnown RBP31.16■■■□□ 2.58
LHX3-202ENST00000371748 RAPGEF2Q9Y4G8 1499 aa31.11■■■□□ 2.57
LHX3-202ENST00000371748 FANCD2Q9BXW9 1451 aa31.03■■■□□ 2.56
LHX3-202ENST00000371748 NESP48681 1621 aa31.02■■■□□ 2.56
LHX3-202ENST00000371748 KIF27Q86VH2 1401 aa31.01■■■□□ 2.55
LHX3-202ENST00000371748 PRXQ9BXM0 1461 aa30.95■■■□□ 2.55
LHX3-202ENST00000371748 FGD5Q6ZNL6 1462 aa30.93■■■□□ 2.54
LHX3-202ENST00000371748 DNAJC5BQ9UF47 199 aa30.92■■■□□ 2.54
LHX3-202ENST00000371748 ERICH3Q5RHP9 1530 aa30.92■■■□□ 2.54
LHX3-202ENST00000371748 CLIP1P30622 1438 aa30.91■■■□□ 2.54
LHX3-202ENST00000371748 LAMC3Q9Y6N6 1575 aa30.86■■■□□ 2.53
LHX3-202ENST00000371748 CUX2O14529 1486 aa30.86■■■□□ 2.53
LHX3-202ENST00000371748 RANGAP1P46060 587 aaPredicted RBP30.82■■■□□ 2.52
LHX3-202ENST00000371748 TTBK1Q5TCY1 1321 aaPredicted RBP30.81■■■□□ 2.52
LHX3-202ENST00000371748 DNMBPQ6XZF7 1577 aa30.81■■■□□ 2.52
LHX3-202ENST00000371748 TOPBP1Q92547 1522 aa30.76■■■□□ 2.51
LHX3-202ENST00000371748 IGF1RP08069 1367 aa30.71■■■□□ 2.51
LHX3-202ENST00000371748 VPS8Q8N3P4 1428 aa30.7■■■□□ 2.5
LHX3-202ENST00000371748 POLA1P09884 1462 aaPredicted RBP30.68■■■□□ 2.5
LHX3-202ENST00000371748 RAD54L2Q9Y4B4 1467 aa30.67■■■□□ 2.5
LHX3-202ENST00000371748 URB2Q14146 1524 aaKnown RBP30.63■■■□□ 2.49
LHX3-202ENST00000371748 PDS5BQ9NTI5 1447 aa30.62■■■□□ 2.49
LHX3-202ENST00000371748 KIF21AQ7Z4S6 1674 aa30.6■■■□□ 2.49
LHX3-202ENST00000371748 ABCA10Q8WWZ4 1543 aa30.58■■■□□ 2.49
LHX3-202ENST00000371748 CARMIL1Q5VZK9 1371 aa30.57■■■□□ 2.48
LHX3-202ENST00000371748 ARAP1Q96P48 1450 aa30.54■■■□□ 2.48
LHX3-202ENST00000371748 APLP2Q06481 763 aa30.46■■■□□ 2.47
LHX3-202ENST00000371748 WDR97A6NE52 1622 aa30.45■■■□□ 2.47
LHX3-202ENST00000371748 ARHGAP35Q9NRY4 1499 aa30.42■■■□□ 2.46
LHX3-202ENST00000371748 ZEB1P37275 1124 aaPredicted RBP30.42■■■□□ 2.46
LHX3-202ENST00000371748 CUL7Q14999 1698 aa30.33■■■□□ 2.45
LHX3-202ENST00000371748 TDRD9Q8NDG6 1382 aaKnown RBP30.32■■■□□ 2.44
LHX3-202ENST00000371748 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.32■■■□□ 2.44
LHX3-202ENST00000371748 ABCA5Q8WWZ7 1642 aa30.31■■■□□ 2.44
LHX3-202ENST00000371748 GAPVD1Q14C86 1478 aa30.24■■■□□ 2.43
LHX3-202ENST00000371748 TARBP1Q13395 1621 aaKnown RBP30.23■■■□□ 2.43
LHX3-202ENST00000371748 MRC2Q9UBG0 1479 aa30.21■■■□□ 2.43
LHX3-202ENST00000371748 CCER1Q8TC90 406 aaPredicted RBP30.2■■■□□ 2.42
LHX3-202ENST00000371748 KANK4Q5T7N3 995 aaPredicted RBP30.17■■■□□ 2.42
LHX3-202ENST00000371748 CTTNBP2Q8WZ74 1663 aa30.16■■■□□ 2.42
LHX3-202ENST00000371748 HNRNPUL2Q1KMD3 747 aaKnown RBP30.1■■■□□ 2.41
LHX3-202ENST00000371748 P3H3Q8IVL6 736 aa30.08■■■□□ 2.41
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms