Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LDB2O43679 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
LDB2O43679 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
LDB2O43679 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
LDB2O43679 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
LDB2O43679 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
LDB2O43679 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LDB2O43679 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.35■□□□□ 0.85
LDB2O43679 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LDB2O43679 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LDB2O43679 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC20.35■□□□□ 0.85
LDB2O43679 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LDB2O43679 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC20.35■□□□□ 0.85
LDB2O43679 AC093787.1-201ENST00000450396 207 ntBASIC20.35■□□□□ 0.85
LDB2O43679 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC20.35■□□□□ 0.85
LDB2O43679 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LDB2O43679 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LDB2O43679 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
LDB2O43679 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LDB2O43679 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
LDB2O43679 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
LDB2O43679 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LDB2O43679 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LDB2O43679 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
LDB2O43679 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.35■□□□□ 0.85
LDB2O43679 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LDB2O43679 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
LDB2O43679 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
LDB2O43679 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC20.34■□□□□ 0.85
LDB2O43679 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LDB2O43679 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.34■□□□□ 0.85
LDB2O43679 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LDB2O43679 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
LDB2O43679 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LDB2O43679 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
LDB2O43679 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.34■□□□□ 0.85
LDB2O43679 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.34■□□□□ 0.85
LDB2O43679 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
LDB2O43679 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
LDB2O43679 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC20.34■□□□□ 0.85
LDB2O43679 AL512625.2-201ENST00000417533 625 ntBASIC20.34■□□□□ 0.85
LDB2O43679 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LDB2O43679 CROCCP5-201ENST00000436658 830 ntBASIC20.34■□□□□ 0.85
LDB2O43679 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.34■□□□□ 0.85
LDB2O43679 AC133552.2-202ENST00000575694 574 ntBASIC20.34■□□□□ 0.85
LDB2O43679 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
LDB2O43679 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LDB2O43679 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
LDB2O43679 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
LDB2O43679 AC010980.2-201ENST00000587099 1412 ntBASIC20.34■□□□□ 0.85
LDB2O43679 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
LDB2O43679 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
LDB2O43679 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
LDB2O43679 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC20.34■□□□□ 0.85
LDB2O43679 GCK-205ENST00000437084 1385 ntTSL 5 BASIC20.34■□□□□ 0.85
LDB2O43679 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20.33■□□□□ 0.85
LDB2O43679 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
LDB2O43679 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LDB2O43679 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
LDB2O43679 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
LDB2O43679 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LDB2O43679 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
LDB2O43679 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
LDB2O43679 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC20.33■□□□□ 0.85
LDB2O43679 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC20.33■□□□□ 0.85
LDB2O43679 CYP2T3P-201ENST00000601990 817 ntBASIC20.33■□□□□ 0.85
LDB2O43679 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
LDB2O43679 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC20.33■□□□□ 0.84
LDB2O43679 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
LDB2O43679 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LDB2O43679 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
LDB2O43679 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
LDB2O43679 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
LDB2O43679 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LDB2O43679 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20.32■□□□□ 0.84
LDB2O43679 KRT18P68-201ENST00000392293 1000 ntBASIC20.32■□□□□ 0.84
LDB2O43679 AL355472.2-201ENST00000422958 438 ntBASIC20.32■□□□□ 0.84
LDB2O43679 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC20.32■□□□□ 0.84
LDB2O43679 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LDB2O43679 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
LDB2O43679 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
LDB2O43679 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
LDB2O43679 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.31■□□□□ 0.84
LDB2O43679 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.31■□□□□ 0.84
LDB2O43679 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC20.31■□□□□ 0.84
LDB2O43679 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LDB2O43679 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
LDB2O43679 SMG8-203ENST00000578922 2178 ntBASIC20.31■□□□□ 0.84
LDB2O43679 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC20.31■□□□□ 0.84
LDB2O43679 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.31■□□□□ 0.84
LDB2O43679 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
LDB2O43679 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC20.31■□□□□ 0.84
LDB2O43679 MIR663A-201ENST00000385250 93 ntBASIC20.31■□□□□ 0.84
LDB2O43679 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LDB2O43679 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LDB2O43679 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
LDB2O43679 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LDB2O43679 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LDB2O43679 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
LDB2O43679 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 164.8 ms