RNA–Protein interactions for RNA: ENST00000447419.6

PTX4-203, Transcript of pentraxin 4, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTX4, Length 1,516 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTX4-203ENST00000447419 NISCHQ9Y2I1 1504 aa49.64■■■■■ 5.54
PTX4-203ENST00000447419 CCDC180Q9P1Z9 1646 aa43.94■■■■■ 4.63
PTX4-203ENST00000447419 ABCC9O60706 1549 aa43.31■■■■■ 4.52
PTX4-203ENST00000447419 DCAF8L2P0C7V8 631 aa41.79■■■■■ 4.28
PTX4-203ENST00000447419 RB1CC1Q8TDY2 1594 aa41.45■■■■■ 4.23
PTX4-203ENST00000447419 NACADO15069 1562 aa41.37■■■■■ 4.21
PTX4-203ENST00000447419 ZCCHC6Q5VYS8 1495 aaKnown RBP41.34■■■■■ 4.21
PTX4-203ENST00000447419 MYO15BQ96JP2 1530 aa41.02■■■■■ 4.16
PTX4-203ENST00000447419 DCAF1Q9Y4B6 1507 aa40.91■■■■■ 4.14
PTX4-203ENST00000447419 PABPN1Q86U42 306 aaKnown RBP eCLIP40.58■■■■■ 4.09
PTX4-203ENST00000447419 UNC13AQ9UPW8 1703 aa40.51■■■■■ 4.08
PTX4-203ENST00000447419 SCRIBQ14160 1630 aa40.38■■■■■ 4.06
PTX4-203ENST00000447419 BICRAQ9NZM4 1560 aa40.26■■■■■ 4.04
PTX4-203ENST00000447419 DNAJC5BQ9UF47 199 aa39.8■■■■□ 3.96
PTX4-203ENST00000447419 SHROOM4Q9ULL8 1493 aa39.6■■■■□ 3.93
PTX4-203ENST00000447419 EIF4G1Q04637 1599 aaKnown RBP39.2■■■■□ 3.87
PTX4-203ENST00000447419 CC2D2AQ9P2K1 1620 aa39.06■■■■□ 3.84
PTX4-203ENST00000447419 CECR2Q9BXF3 1484 aa38.83■■■■□ 3.81
PTX4-203ENST00000447419 SMARCA4P51532 1647 aa38.5■■■■□ 3.75
PTX4-203ENST00000447419 BAZ1AQ9NRL2 1556 aaPredicted RBP38.43■■■■□ 3.74
PTX4-203ENST00000447419 MROH2BQ7Z745 1585 aa38.35■■■■□ 3.73
PTX4-203ENST00000447419 ATAD2BQ9ULI0 1458 aa38.32■■■■□ 3.72
PTX4-203ENST00000447419 NCAPD3P42695 1498 aa38.22■■■■□ 3.71
PTX4-203ENST00000447419 SMARCA2P51531 1590 aa38.19■■■■□ 3.7
PTX4-203ENST00000447419 BAZ1BQ9UIG0 1483 aaKnown RBP38.02■■■■□ 3.68
PTX4-203ENST00000447419 PEG3Q9GZU2 1588 aa38.01■■■■□ 3.68
PTX4-203ENST00000447419 HMGXB3Q12766 1538 aa38■■■■□ 3.67
PTX4-203ENST00000447419 WIZO95785 1651 aa37.92■■■■□ 3.66
PTX4-203ENST00000447419 RSF1Q96T23 1441 aaPredicted RBP37.9■■■■□ 3.66
PTX4-203ENST00000447419 NESP48681 1621 aa37.5■■■■□ 3.59
PTX4-203ENST00000447419 TOP2AP11388 1531 aaKnown RBP37.44■■■■□ 3.58
PTX4-203ENST00000447419 ERCC6Q03468 1493 aa37.28■■■■□ 3.56
PTX4-203ENST00000447419 SUPT5HO00267 1087 aaKnown RBP37.2■■■■□ 3.55
PTX4-203ENST00000447419 LAMC3Q9Y6N6 1575 aa37.18■■■■□ 3.54
PTX4-203ENST00000447419 CADPSQ9ULU8 1353 aa37.17■■■■□ 3.54
PTX4-203ENST00000447419 CCDC88BA6NC98 1476 aa37.08■■■■□ 3.53
PTX4-203ENST00000447419 PDS5BQ9NTI5 1447 aa36.99■■■■□ 3.51
PTX4-203ENST00000447419 CFTRP13569 1480 aa36.93■■■■□ 3.5
PTX4-203ENST00000447419 KIF21AQ7Z4S6 1674 aa36.92■■■■□ 3.5
PTX4-203ENST00000447419 FANCD2Q9BXW9 1451 aa36.79■■■■□ 3.48
PTX4-203ENST00000447419 THOC2Q8NI27 1593 aaKnown RBP36.76■■■■□ 3.47
PTX4-203ENST00000447419 CUX2O14529 1486 aa36.71■■■■□ 3.47
PTX4-203ENST00000447419 CEP164Q9UPV0 1460 aa36.71■■■■□ 3.47
PTX4-203ENST00000447419 MRC2Q9UBG0 1479 aa36.63■■■■□ 3.45
PTX4-203ENST00000447419 PRDM2Q13029 1718 aa36.49■■■■□ 3.43
PTX4-203ENST00000447419 WDR62O43379 1518 aa36.47■■■■□ 3.43
PTX4-203ENST00000447419 URB2Q14146 1524 aaKnown RBP36.43■■■■□ 3.42
PTX4-203ENST00000447419 TOPBP1Q92547 1522 aa36.18■■■■□ 3.38
PTX4-203ENST00000447419 DNMBPQ6XZF7 1577 aa36.09■■■■□ 3.37
PTX4-203ENST00000447419 ABCC8Q09428 1581 aa36.03■■■■□ 3.36
PTX4-203ENST00000447419 CUX1P39880 1505 aa35.96■■■■□ 3.35
PTX4-203ENST00000447419 IFT140Q96RY7 1462 aa35.9■■■■□ 3.34
PTX4-203ENST00000447419 POLA1P09884 1462 aaPredicted RBP35.89■■■■□ 3.34
PTX4-203ENST00000447419 ZNF608Q9ULD9 1512 aaPredicted RBP35.87■■■■□ 3.33
PTX4-203ENST00000447419 FGD5Q6ZNL6 1462 aa35.83■■■■□ 3.33
PTX4-203ENST00000447419 RAD54L2Q9Y4B4 1467 aa35.83■■■■□ 3.33
PTX4-203ENST00000447419 SOGA1O94964 1423 aa35.76■■■■□ 3.32
PTX4-203ENST00000447419 TARBP1Q13395 1621 aaKnown RBP35.74■■■■□ 3.31
PTX4-203ENST00000447419 WRNQ14191 1432 aaPredicted RBP eCLIP35.73■■■■□ 3.31
PTX4-203ENST00000447419 AQRO60306 1485 aaKnown RBP eCLIP35.69■■■■□ 3.3
PTX4-203ENST00000447419 DNAJC5Q9H3Z4 198 aa35.67■■■■□ 3.3
PTX4-203ENST00000447419 SYNJ1O43426 1573 aa35.65■■■■□ 3.3
PTX4-203ENST00000447419 TDRD9Q8NDG6 1382 aaKnown RBP35.65■■■■□ 3.3
PTX4-203ENST00000447419 EIF4G3O43432 1585 aaKnown RBP35.63■■■■□ 3.3
PTX4-203ENST00000447419 TOP2BQ02880 1626 aa35.56■■■■□ 3.28
PTX4-203ENST00000447419 BIVM-ERCC5R4GMW8 1640 aa35.52■■■■□ 3.28
PTX4-203ENST00000447419 WDR97A6NE52 1622 aa35.4■■■■□ 3.26
PTX4-203ENST00000447419 ABCA10Q8WWZ4 1543 aa35.4■■■■□ 3.26
PTX4-203ENST00000447419 FBLN2P98095 1184 aa35.36■■■■□ 3.25
PTX4-203ENST00000447419 GAPVD1Q14C86 1478 aa35.33■■■■□ 3.25
PTX4-203ENST00000447419 OSCARQ8IYS5 282 aa35.32■■■■□ 3.25
PTX4-203ENST00000447419 SNAPC4Q5SXM2 1469 aa35.32■■■■□ 3.24
PTX4-203ENST00000447419 GRIN2BQ13224 1484 aa35.28■■■■□ 3.24
PTX4-203ENST00000447419 ABCA5Q8WWZ7 1642 aa35.25■■■■□ 3.23
PTX4-203ENST00000447419 PBRM1Q86U86 1689 aa35.18■■■■□ 3.22
PTX4-203ENST00000447419 CHD1O14646 1710 aa35.16■■■■□ 3.22
PTX4-203ENST00000447419 CHMP7Q8WUX9 453 aaPredicted RBP35.15■■■■□ 3.22
PTX4-203ENST00000447419 MAGI1Q96QZ7 1491 aaPredicted RBP35.14■■■■□ 3.22
PTX4-203ENST00000447419 SYNJ2O15056 1496 aa35.04■■■■□ 3.2
PTX4-203ENST00000447419 TRIM41Q8WV44 630 aa35.01■■■■□ 3.19
PTX4-203ENST00000447419 KIF27Q86VH2 1401 aa34.95■■■■□ 3.19
PTX4-203ENST00000447419 ADAMTS12P58397 1594 aa34.94■■■■□ 3.18
PTX4-203ENST00000447419 ERICH3Q5RHP9 1530 aa34.94■■■■□ 3.18
PTX4-203ENST00000447419 FHAD1B1AJZ9 1412 aa34.89■■■■□ 3.18
PTX4-203ENST00000447419 GRIN2AQ12879 1464 aa34.86■■■■□ 3.17
PTX4-203ENST00000447419 IGF1RP08069 1367 aa34.84■■■■□ 3.17
PTX4-203ENST00000447419 RUSC2Q8N2Y8 1516 aa34.8■■■■□ 3.16
PTX4-203ENST00000447419 CLASP1Q7Z460 1538 aa34.76■■■■□ 3.16
PTX4-203ENST00000447419 ARHGEF11O15085 1522 aa34.74■■■■□ 3.15
PTX4-203ENST00000447419 RIMBP3CA6NJZ7 1639 aa34.73■■■■□ 3.15
PTX4-203ENST00000447419 RIMBP3BA6NNM3 1639 aa34.73■■■■□ 3.15
PTX4-203ENST00000447419 RIMBP3Q9UFD9 1639 aa34.73■■■■□ 3.15
PTX4-203ENST00000447419 CEP170Q5SW79 1584 aa34.71■■■■□ 3.15
PTX4-203ENST00000447419 NUP160Q12769 1436 aa34.66■■■■□ 3.14
PTX4-203ENST00000447419 CARMIL1Q5VZK9 1371 aa34.64■■■■□ 3.14
PTX4-203ENST00000447419 CHIC1Q5VXU3 224 aa34.6■■■■□ 3.13
PTX4-203ENST00000447419 CUL7Q14999 1698 aa34.6■■■■□ 3.13
PTX4-203ENST00000447419 CYB5RLQ6IPT4 315 aa34.55■■■■□ 3.12
PTX4-203ENST00000447419 ARAP1Q96P48 1450 aa34.49■■■■□ 3.11
PTX4-203ENST00000447419 FAM9AQ8IZU1 332 aaPredicted RBP34.46■■■■□ 3.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms