RNA–Protein interactions for RNA: ENST00000440705.6

VRK2-207, Transcript of vaccinia related kinase 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VRK2, Length 1,676 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK2-207ENST00000440705 NISCHQ9Y2I1 1504 aa46.29■■■■■ 5
VRK2-207ENST00000440705 CCDC180Q9P1Z9 1646 aa40.51■■■■■ 4.08
VRK2-207ENST00000440705 ZCCHC6Q5VYS8 1495 aaKnown RBP38.82■■■■□ 3.81
VRK2-207ENST00000440705 ABCC9O60706 1549 aa38.45■■■■□ 3.75
VRK2-207ENST00000440705 DCAF1Q9Y4B6 1507 aa38.32■■■■□ 3.73
VRK2-207ENST00000440705 DCAF8L2P0C7V8 631 aa38.29■■■■□ 3.72
VRK2-207ENST00000440705 MYO15BQ96JP2 1530 aa37.98■■■■□ 3.67
VRK2-207ENST00000440705 NACADO15069 1562 aa37.8■■■■□ 3.64
VRK2-207ENST00000440705 RB1CC1Q8TDY2 1594 aa37.53■■■■□ 3.6
VRK2-207ENST00000440705 SHROOM4Q9ULL8 1493 aa37.49■■■■□ 3.59
VRK2-207ENST00000440705 SCRIBQ14160 1630 aa37.14■■■■□ 3.54
VRK2-207ENST00000440705 UNC13AQ9UPW8 1703 aa36.7■■■■□ 3.47
VRK2-207ENST00000440705 BICRAQ9NZM4 1560 aa36.33■■■■□ 3.41
VRK2-207ENST00000440705 PABPN1Q86U42 306 aaKnown RBP eCLIP36.2■■■■□ 3.39
VRK2-207ENST00000440705 SUPT5HO00267 1087 aaKnown RBP36■■■■□ 3.35
VRK2-207ENST00000440705 CECR2Q9BXF3 1484 aa35.93■■■■□ 3.34
VRK2-207ENST00000440705 RSF1Q96T23 1441 aaPredicted RBP35.8■■■■□ 3.32
VRK2-207ENST00000440705 BAZ1AQ9NRL2 1556 aaPredicted RBP35.78■■■■□ 3.32
VRK2-207ENST00000440705 MROH2BQ7Z745 1585 aa35.71■■■■□ 3.31
VRK2-207ENST00000440705 SMARCA4P51532 1647 aa35.62■■■■□ 3.29
VRK2-207ENST00000440705 WIZO95785 1651 aa35.4■■■■□ 3.26
VRK2-207ENST00000440705 EIF4G1Q04637 1599 aaKnown RBP35.28■■■■□ 3.24
VRK2-207ENST00000440705 PEG3Q9GZU2 1588 aa35.23■■■■□ 3.23
VRK2-207ENST00000440705 SMARCA2P51531 1590 aa35.12■■■■□ 3.21
VRK2-207ENST00000440705 ATAD2BQ9ULI0 1458 aa35.1■■■■□ 3.21
VRK2-207ENST00000440705 TOP2AP11388 1531 aaKnown RBP35.07■■■■□ 3.21
VRK2-207ENST00000440705 BAZ1BQ9UIG0 1483 aaKnown RBP34.91■■■■□ 3.18
VRK2-207ENST00000440705 NCAPD3P42695 1498 aa34.88■■■■□ 3.17
VRK2-207ENST00000440705 CC2D2AQ9P2K1 1620 aa34.81■■■■□ 3.16
VRK2-207ENST00000440705 HMGXB3Q12766 1538 aa34.81■■■■□ 3.16
VRK2-207ENST00000440705 CCDC88BA6NC98 1476 aa34.7■■■■□ 3.14
VRK2-207ENST00000440705 CHIC1Q5VXU3 224 aa34.35■■■■□ 3.09
VRK2-207ENST00000440705 DNAJC5BQ9UF47 199 aa34.09■■■■□ 3.05
VRK2-207ENST00000440705 CFTRP13569 1480 aa34.02■■■■□ 3.04
VRK2-207ENST00000440705 CADPSQ9ULU8 1353 aa33.96■■■■□ 3.03
VRK2-207ENST00000440705 TRIM41Q8WV44 630 aa33.93■■■■□ 3.02
VRK2-207ENST00000440705 PRDM2Q13029 1718 aa33.85■■■■□ 3.01
VRK2-207ENST00000440705 ABCC8Q09428 1581 aa33.84■■■■□ 3.01
VRK2-207ENST00000440705 LAMC3Q9Y6N6 1575 aa33.74■■■□□ 2.99
VRK2-207ENST00000440705 WRNQ14191 1432 aaPredicted RBP eCLIP33.72■■■□□ 2.99
VRK2-207ENST00000440705 NESP48681 1621 aa33.65■■■□□ 2.98
VRK2-207ENST00000440705 FANCD2Q9BXW9 1451 aa33.56■■■□□ 2.96
VRK2-207ENST00000440705 SYNJ1O43426 1573 aa33.54■■■□□ 2.96
VRK2-207ENST00000440705 PDS5BQ9NTI5 1447 aa33.5■■■□□ 2.95
VRK2-207ENST00000440705 TOP2BQ02880 1626 aa33.48■■■□□ 2.95
VRK2-207ENST00000440705 BIVM-ERCC5R4GMW8 1640 aa33.45■■■□□ 2.94
VRK2-207ENST00000440705 CUX1P39880 1505 aa33.41■■■□□ 2.94
VRK2-207ENST00000440705 CEP164Q9UPV0 1460 aa33.39■■■□□ 2.94
VRK2-207ENST00000440705 KIF21AQ7Z4S6 1674 aa33.28■■■□□ 2.92
VRK2-207ENST00000440705 DNMBPQ6XZF7 1577 aa33.23■■■□□ 2.91
VRK2-207ENST00000440705 FAM9AQ8IZU1 332 aaPredicted RBP33.22■■■□□ 2.91
VRK2-207ENST00000440705 TOPBP1Q92547 1522 aa33.17■■■□□ 2.9
VRK2-207ENST00000440705 SOGA1O94964 1423 aa33.17■■■□□ 2.9
VRK2-207ENST00000440705 EEA1Q15075 1411 aa33.17■■■□□ 2.9
VRK2-207ENST00000440705 URB2Q14146 1524 aaKnown RBP33.13■■■□□ 2.89
VRK2-207ENST00000440705 FGD5Q6ZNL6 1462 aa33.1■■■□□ 2.89
VRK2-207ENST00000440705 MRC2Q9UBG0 1479 aa33.04■■■□□ 2.88
VRK2-207ENST00000440705 ERCC6Q03468 1493 aa33.04■■■□□ 2.88
VRK2-207ENST00000440705 RUSC2Q8N2Y8 1516 aa33.04■■■□□ 2.88
VRK2-207ENST00000440705 LOC105371045A0A1W2PR82 267 aa32.99■■■□□ 2.87
VRK2-207ENST00000440705 POLA1P09884 1462 aaPredicted RBP32.98■■■□□ 2.87
VRK2-207ENST00000440705 CSRNP3Q8WYN3 585 aa32.97■■■□□ 2.87
VRK2-207ENST00000440705 KIF27Q86VH2 1401 aa32.92■■■□□ 2.86
VRK2-207ENST00000440705 WDR62O43379 1518 aa32.87■■■□□ 2.85
VRK2-207ENST00000440705 CUX2O14529 1486 aa32.85■■■□□ 2.85
VRK2-207ENST00000440705 RAD54L2Q9Y4B4 1467 aa32.84■■■□□ 2.85
VRK2-207ENST00000440705 ABCA10Q8WWZ4 1543 aa32.83■■■□□ 2.85
VRK2-207ENST00000440705 THOC2Q8NI27 1593 aaKnown RBP32.8■■■□□ 2.84
VRK2-207ENST00000440705 WDR97A6NE52 1622 aa32.71■■■□□ 2.83
VRK2-207ENST00000440705 EHMT2Q96KQ7 1210 aa32.71■■■□□ 2.83
VRK2-207ENST00000440705 KIF21BO75037 1637 aa32.7■■■□□ 2.83
VRK2-207ENST00000440705 TARBP1Q13395 1621 aaKnown RBP32.69■■■□□ 2.82
VRK2-207ENST00000440705 GOLGA3Q08378 1498 aa32.65■■■□□ 2.82
VRK2-207ENST00000440705 IGF1RP08069 1367 aa32.62■■■□□ 2.81
VRK2-207ENST00000440705 IFT140Q96RY7 1462 aa32.62■■■□□ 2.81
VRK2-207ENST00000440705 PRXQ9BXM0 1461 aa32.6■■■□□ 2.81
VRK2-207ENST00000440705 TDRD9Q8NDG6 1382 aaKnown RBP32.56■■■□□ 2.8
VRK2-207ENST00000440705 ABCA5Q8WWZ7 1642 aa32.56■■■□□ 2.8
VRK2-207ENST00000440705 ERICH3Q5RHP9 1530 aa32.55■■■□□ 2.8
VRK2-207ENST00000440705 GAPVD1Q14C86 1478 aa32.53■■■□□ 2.8
VRK2-207ENST00000440705 UBTFP17480 764 aaKnown RBP32.53■■■□□ 2.8
VRK2-207ENST00000440705 RAPGEF2Q9Y4G8 1499 aa32.52■■■□□ 2.8
VRK2-207ENST00000440705 TNIKQ9UKE5 1360 aa32.51■■■□□ 2.79
VRK2-207ENST00000440705 CARMIL1Q5VZK9 1371 aa32.47■■■□□ 2.79
VRK2-207ENST00000440705 CUL7Q14999 1698 aa32.42■■■□□ 2.78
VRK2-207ENST00000440705 AQRO60306 1485 aaKnown RBP eCLIP32.39■■■□□ 2.787e-6■□□□□ 9.9
VRK2-207ENST00000440705 ZNF608Q9ULD9 1512 aaPredicted RBP32.37■■■□□ 2.77
VRK2-207ENST00000440705 PBRM1Q86U86 1689 aa32.34■■■□□ 2.77
VRK2-207ENST00000440705 GRIN2BQ13224 1484 aa32.33■■■□□ 2.77
VRK2-207ENST00000440705 EIF4G3O43432 1585 aaKnown RBP32.28■■■□□ 2.76
VRK2-207ENST00000440705 CEP162Q5TB80 1403 aa32.28■■■□□ 2.76
VRK2-207ENST00000440705 FHAD1B1AJZ9 1412 aa32.19■■■□□ 2.74
VRK2-207ENST00000440705 ADAMTS12P58397 1594 aa32.15■■■□□ 2.74
VRK2-207ENST00000440705 CLIP1P30622 1438 aa32.11■■■□□ 2.73
VRK2-207ENST00000440705 SNAPC4Q5SXM2 1469 aa32.1■■■□□ 2.73
VRK2-207ENST00000440705 MAGI1Q96QZ7 1491 aaPredicted RBP32.09■■■□□ 2.73
VRK2-207ENST00000440705 CTTNBP2Q8WZ74 1663 aa32■■■□□ 2.71
VRK2-207ENST00000440705 RANGAP1P46060 587 aaPredicted RBP31.99■■■□□ 2.71
VRK2-207ENST00000440705 SYNJ2O15056 1496 aa31.95■■■□□ 2.71
VRK2-207ENST00000440705 GRIN2AQ12879 1464 aa31.91■■■□□ 2.7
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms