Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 DUX4L14-201ENST00000621227 1267 ntBASIC31.42■■■□□ 2.62
COL2A1P02458 CR559946.2-201ENST00000623684 991 ntBASIC31.42■■■□□ 2.62
COL2A1P02458 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
COL2A1P02458 MIR3648-2-201ENST00000581792 180 ntBASIC31.41■■■□□ 2.62
COL2A1P02458 MIR3648-1-201ENST00000615959 180 ntBASIC31.41■■■□□ 2.62
COL2A1P02458 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
COL2A1P02458 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
COL2A1P02458 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC31.41■■■□□ 2.62
COL2A1P02458 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC31.4■■■□□ 2.62
COL2A1P02458 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC31.4■■■□□ 2.62
COL2A1P02458 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC31.4■■■□□ 2.62
COL2A1P02458 GDI1-215ENST00000630693 786 ntTSL 4 BASIC31.4■■■□□ 2.62
COL2A1P02458 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC31.39■■■□□ 2.62
COL2A1P02458 EI24-212ENST00000615917 1407 ntTSL 2 BASIC31.38■■■□□ 2.61
COL2A1P02458 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
COL2A1P02458 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
COL2A1P02458 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
COL2A1P02458 AL161658.1-201ENST00000623641 1967 ntBASIC31.36■■■□□ 2.61
COL2A1P02458 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC31.36■■■□□ 2.61
COL2A1P02458 AC016575.1-201ENST00000607026 382 ntBASIC31.35■■■□□ 2.61
COL2A1P02458 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC31.35■■■□□ 2.61
COL2A1P02458 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC31.35■■■□□ 2.61
COL2A1P02458 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC31.34■■■□□ 2.61
COL2A1P02458 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
COL2A1P02458 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
COL2A1P02458 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
COL2A1P02458 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC31.33■■■□□ 2.61
COL2A1P02458 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC31.32■■■□□ 2.61
COL2A1P02458 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
COL2A1P02458 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC31.31■■■□□ 2.6
COL2A1P02458 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC31.31■■■□□ 2.6
COL2A1P02458 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
COL2A1P02458 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
COL2A1P02458 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
COL2A1P02458 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
COL2A1P02458 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
COL2A1P02458 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
COL2A1P02458 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC31.25■■■□□ 2.59
COL2A1P02458 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
COL2A1P02458 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC31.24■■■□□ 2.59
COL2A1P02458 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC31.23■■■□□ 2.59
COL2A1P02458 CALM3-209ENST00000597743 577 ntTSL 4 BASIC31.23■■■□□ 2.59
COL2A1P02458 DUX4L13-201ENST00000554103 1267 ntBASIC31.22■■■□□ 2.59
COL2A1P02458 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC31.22■■■□□ 2.59
COL2A1P02458 DUX4L15-201ENST00000611059 1267 ntBASIC31.22■■■□□ 2.59
COL2A1P02458 DUX4L23-201ENST00000615195 1269 ntBASIC31.22■■■□□ 2.59
COL2A1P02458 DUX4L24-201ENST00000617576 1269 ntBASIC31.22■■■□□ 2.59
COL2A1P02458 DUX4L22-201ENST00000618238 1269 ntBASIC31.22■■■□□ 2.59
COL2A1P02458 DUX4L20-201ENST00000619712 1269 ntBASIC31.22■■■□□ 2.59
COL2A1P02458 DUX4L21-201ENST00000622058 1269 ntBASIC31.22■■■□□ 2.59
COL2A1P02458 DUX4L10-201ENST00000622460 1267 ntBASIC31.22■■■□□ 2.59
COL2A1P02458 DUX4L25-201ENST00000624915 1269 ntBASIC31.22■■■□□ 2.59
COL2A1P02458 AC010864.1-201ENST00000609407 1511 ntBASIC31.21■■■□□ 2.59
COL2A1P02458 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC31.21■■■□□ 2.59
COL2A1P02458 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
COL2A1P02458 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC31.21■■■□□ 2.59
COL2A1P02458 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
COL2A1P02458 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC31.2■■■□□ 2.58
COL2A1P02458 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC31.19■■■□□ 2.58
COL2A1P02458 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
COL2A1P02458 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
COL2A1P02458 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC31.18■■■□□ 2.58
COL2A1P02458 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC31.17■■■□□ 2.58
COL2A1P02458 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC31.17■■■□□ 2.58
COL2A1P02458 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
COL2A1P02458 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC31.16■■■□□ 2.58
COL2A1P02458 LINC00273-201ENST00000539813 1452 ntBASIC31.16■■■□□ 2.58
COL2A1P02458 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
COL2A1P02458 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
COL2A1P02458 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
COL2A1P02458 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
COL2A1P02458 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
COL2A1P02458 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC31.14■■■□□ 2.58
COL2A1P02458 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
COL2A1P02458 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
COL2A1P02458 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.57
COL2A1P02458 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC31.14■■■□□ 2.57
COL2A1P02458 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
COL2A1P02458 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC31.13■■■□□ 2.57
COL2A1P02458 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
COL2A1P02458 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC31.12■■■□□ 2.57
COL2A1P02458 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC31.11■■■□□ 2.57
COL2A1P02458 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC31.1■■■□□ 2.57
COL2A1P02458 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
COL2A1P02458 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
COL2A1P02458 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC31.1■■■□□ 2.57
COL2A1P02458 CHML-204ENST00000638121 920 ntTSL 2 BASIC31.09■■■□□ 2.57
COL2A1P02458 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
COL2A1P02458 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
COL2A1P02458 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
COL2A1P02458 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC31.05■■■□□ 2.56
COL2A1P02458 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC31.05■■■□□ 2.56
COL2A1P02458 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC31.05■■■□□ 2.56
COL2A1P02458 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
COL2A1P02458 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC31.04■■■□□ 2.56
COL2A1P02458 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC31.03■■■□□ 2.56
COL2A1P02458 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC31.02■■■□□ 2.56
COL2A1P02458 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC31.02■■■□□ 2.56
COL2A1P02458 HES6-205ENST00000409356 528 ntTSL 2 BASIC31.02■■■□□ 2.56
COL2A1P02458 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms