Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LDB2O43679 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
LDB2O43679 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
LDB2O43679 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
LDB2O43679 VMO1-204ENST00000441199 741 ntTSL 2 BASIC20.54■□□□□ 0.88
LDB2O43679 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC20.54■□□□□ 0.88
LDB2O43679 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC20.54■□□□□ 0.88
LDB2O43679 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC20.54■□□□□ 0.88
LDB2O43679 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
LDB2O43679 AL137784.2-201ENST00000607332 1000 ntBASIC20.54■□□□□ 0.88
LDB2O43679 AC016405.3-201ENST00000607710 860 ntBASIC20.54■□□□□ 0.88
LDB2O43679 FAM21FP-204ENST00000608637 956 ntBASIC20.54■□□□□ 0.88
LDB2O43679 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC20.54■□□□□ 0.88
LDB2O43679 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
LDB2O43679 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LDB2O43679 AC092667.1-201ENST00000434301 2586 ntBASIC20.54■□□□□ 0.88
LDB2O43679 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LDB2O43679 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LDB2O43679 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.54■□□□□ 0.88
LDB2O43679 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.54■□□□□ 0.88
LDB2O43679 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LDB2O43679 AC068338.2-201ENST00000563278 1430 ntBASIC20.53■□□□□ 0.88
LDB2O43679 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LDB2O43679 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LDB2O43679 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
LDB2O43679 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
LDB2O43679 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
LDB2O43679 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC20.53■□□□□ 0.88
LDB2O43679 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC20.53■□□□□ 0.88
LDB2O43679 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
LDB2O43679 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
LDB2O43679 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LDB2O43679 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.53■□□□□ 0.88
LDB2O43679 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LDB2O43679 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LDB2O43679 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LDB2O43679 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC20.53■□□□□ 0.88
LDB2O43679 LINC01521-201ENST00000504184 1943 ntBASIC20.53■□□□□ 0.88
LDB2O43679 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC20.53■□□□□ 0.88
LDB2O43679 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
LDB2O43679 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
LDB2O43679 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.52■□□□□ 0.88
LDB2O43679 GABARAPL3-202ENST00000624044 1851 ntBASIC20.52■□□□□ 0.88
LDB2O43679 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LDB2O43679 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LDB2O43679 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.52■□□□□ 0.88
LDB2O43679 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
LDB2O43679 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
LDB2O43679 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
LDB2O43679 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
LDB2O43679 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
LDB2O43679 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
LDB2O43679 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.52■□□□□ 0.88
LDB2O43679 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC20.52■□□□□ 0.88
LDB2O43679 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC20.52■□□□□ 0.88
LDB2O43679 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC20.52■□□□□ 0.88
LDB2O43679 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
LDB2O43679 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.52■□□□□ 0.88
LDB2O43679 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
LDB2O43679 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
LDB2O43679 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.52■□□□□ 0.87
LDB2O43679 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.52■□□□□ 0.87
LDB2O43679 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
LDB2O43679 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
LDB2O43679 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LDB2O43679 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
LDB2O43679 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
LDB2O43679 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LDB2O43679 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
LDB2O43679 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
LDB2O43679 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LDB2O43679 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC20.51■□□□□ 0.87
LDB2O43679 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC20.51■□□□□ 0.87
LDB2O43679 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC20.51■□□□□ 0.87
LDB2O43679 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
LDB2O43679 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LDB2O43679 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
LDB2O43679 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LDB2O43679 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
LDB2O43679 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LDB2O43679 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LDB2O43679 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LDB2O43679 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LDB2O43679 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.51■□□□□ 0.87
LDB2O43679 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
LDB2O43679 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
LDB2O43679 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LDB2O43679 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
LDB2O43679 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC20.5■□□□□ 0.87
LDB2O43679 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.5■□□□□ 0.87
LDB2O43679 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
LDB2O43679 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LDB2O43679 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
LDB2O43679 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LDB2O43679 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LDB2O43679 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LDB2O43679 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC20.5■□□□□ 0.87
LDB2O43679 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC20.5■□□□□ 0.87
LDB2O43679 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LDB2O43679 AC020907.5-201ENST00000624372 1936 ntBASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 65.9 ms