Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 SAPCD2P1-201ENST00000395413 1184 ntBASIC31.7■■■□□ 2.66
COL17A1Q9UMD9 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC31.7■■■□□ 2.66
COL17A1Q9UMD9 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC31.7■■■□□ 2.66
COL17A1Q9UMD9 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC31.7■■■□□ 2.66
COL17A1Q9UMD9 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC31.7■■■□□ 2.66
COL17A1Q9UMD9 WWOX-216ENST00000569818 525 ntBASIC31.7■■■□□ 2.66
COL17A1Q9UMD9 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC31.7■■■□□ 2.66
COL17A1Q9UMD9 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
COL17A1Q9UMD9 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
COL17A1Q9UMD9 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC31.7■■■□□ 2.66
COL17A1Q9UMD9 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC31.7■■■□□ 2.66
COL17A1Q9UMD9 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC31.69■■■□□ 2.66
COL17A1Q9UMD9 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
COL17A1Q9UMD9 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC31.69■■■□□ 2.66
COL17A1Q9UMD9 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC31.69■■■□□ 2.66
COL17A1Q9UMD9 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC31.69■■■□□ 2.66
COL17A1Q9UMD9 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
COL17A1Q9UMD9 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
COL17A1Q9UMD9 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
COL17A1Q9UMD9 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
COL17A1Q9UMD9 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC31.68■■■□□ 2.66
COL17A1Q9UMD9 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
COL17A1Q9UMD9 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
COL17A1Q9UMD9 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC31.67■■■□□ 2.66
COL17A1Q9UMD9 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC31.67■■■□□ 2.66
COL17A1Q9UMD9 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC31.67■■■□□ 2.66
COL17A1Q9UMD9 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
COL17A1Q9UMD9 AF186192.3-201ENST00000583427 947 ntBASIC31.67■■■□□ 2.66
COL17A1Q9UMD9 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC31.67■■■□□ 2.66
COL17A1Q9UMD9 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
COL17A1Q9UMD9 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
COL17A1Q9UMD9 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC31.66■■■□□ 2.66
COL17A1Q9UMD9 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
COL17A1Q9UMD9 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC31.66■■■□□ 2.66
COL17A1Q9UMD9 GGT1-206ENST00000404223 952 ntTSL 2 BASIC31.66■■■□□ 2.66
COL17A1Q9UMD9 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC31.66■■■□□ 2.66
COL17A1Q9UMD9 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC31.66■■■□□ 2.66
COL17A1Q9UMD9 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC31.66■■■□□ 2.66
COL17A1Q9UMD9 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC31.66■■■□□ 2.66
COL17A1Q9UMD9 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC31.66■■■□□ 2.66
COL17A1Q9UMD9 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
COL17A1Q9UMD9 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC31.65■■■□□ 2.66
COL17A1Q9UMD9 AL355355.2-201ENST00000442321 338 ntBASIC31.65■■■□□ 2.66
COL17A1Q9UMD9 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC31.65■■■□□ 2.66
COL17A1Q9UMD9 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC31.65■■■□□ 2.66
COL17A1Q9UMD9 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
COL17A1Q9UMD9 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
COL17A1Q9UMD9 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
COL17A1Q9UMD9 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC31.65■■■□□ 2.66
COL17A1Q9UMD9 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC31.65■■■□□ 2.66
COL17A1Q9UMD9 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC31.65■■■□□ 2.66
COL17A1Q9UMD9 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC31.65■■■□□ 2.66
COL17A1Q9UMD9 AC087388.1-201ENST00000571370 1112 ntBASIC31.65■■■□□ 2.66
COL17A1Q9UMD9 AP000525.1-201ENST00000608286 694 ntBASIC31.65■■■□□ 2.66
COL17A1Q9UMD9 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
COL17A1Q9UMD9 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
COL17A1Q9UMD9 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
COL17A1Q9UMD9 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC31.64■■■□□ 2.66
COL17A1Q9UMD9 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC31.64■■■□□ 2.66
COL17A1Q9UMD9 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
COL17A1Q9UMD9 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
COL17A1Q9UMD9 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
COL17A1Q9UMD9 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC31.64■■■□□ 2.66
COL17A1Q9UMD9 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
COL17A1Q9UMD9 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
COL17A1Q9UMD9 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC31.63■■■□□ 2.65
COL17A1Q9UMD9 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
COL17A1Q9UMD9 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
COL17A1Q9UMD9 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
COL17A1Q9UMD9 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC31.63■■■□□ 2.65
COL17A1Q9UMD9 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC31.63■■■□□ 2.65
COL17A1Q9UMD9 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC31.63■■■□□ 2.65
COL17A1Q9UMD9 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC31.63■■■□□ 2.65
COL17A1Q9UMD9 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
COL17A1Q9UMD9 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
COL17A1Q9UMD9 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC31.63■■■□□ 2.65
COL17A1Q9UMD9 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC31.63■■■□□ 2.65
COL17A1Q9UMD9 CYP2D8P-201ENST00000433633 1490 ntBASIC31.62■■■□□ 2.65
COL17A1Q9UMD9 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
COL17A1Q9UMD9 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC31.62■■■□□ 2.65
COL17A1Q9UMD9 METTL23-204ENST00000586752 904 ntTSL 2 BASIC31.62■■■□□ 2.65
COL17A1Q9UMD9 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
COL17A1Q9UMD9 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC31.62■■■□□ 2.65
COL17A1Q9UMD9 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
COL17A1Q9UMD9 LINC01568-207ENST00000641790 1380 ntBASIC31.61■■■□□ 2.65
COL17A1Q9UMD9 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
COL17A1Q9UMD9 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC31.61■■■□□ 2.65
COL17A1Q9UMD9 GLDC-219ENST00000640208 420 ntTSL 2 BASIC31.61■■■□□ 2.65
COL17A1Q9UMD9 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
COL17A1Q9UMD9 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC31.61■■■□□ 2.65
COL17A1Q9UMD9 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
COL17A1Q9UMD9 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC31.61■■■□□ 2.65
COL17A1Q9UMD9 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC31.61■■■□□ 2.65
COL17A1Q9UMD9 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC31.6■■■□□ 2.65
COL17A1Q9UMD9 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC31.6■■■□□ 2.65
COL17A1Q9UMD9 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
COL17A1Q9UMD9 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC31.6■■■□□ 2.65
COL17A1Q9UMD9 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC31.6■■■□□ 2.65
COL17A1Q9UMD9 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC31.6■■■□□ 2.65
COL17A1Q9UMD9 AC006011.2-201ENST00000621313 1158 ntBASIC31.6■■■□□ 2.65
Retrieved 100 of 98,524 protein–RNA pairs in 157.4 ms