Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
ABCA4P78363 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
ABCA4P78363 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC17.82■□□□□ 0.44
ABCA4P78363 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ABCA4P78363 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC17.82■□□□□ 0.44
ABCA4P78363 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
ABCA4P78363 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC17.82■□□□□ 0.44
ABCA4P78363 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
ABCA4P78363 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ABCA4P78363 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ABCA4P78363 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
ABCA4P78363 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC17.82■□□□□ 0.44
ABCA4P78363 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
ABCA4P78363 C1QBPP2-201ENST00000528754 825 ntBASIC17.82■□□□□ 0.44
ABCA4P78363 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC17.82■□□□□ 0.44
ABCA4P78363 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC17.82■□□□□ 0.44
ABCA4P78363 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC17.82■□□□□ 0.44
ABCA4P78363 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ABCA4P78363 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
ABCA4P78363 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC17.81■□□□□ 0.44
ABCA4P78363 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC17.81■□□□□ 0.44
ABCA4P78363 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
ABCA4P78363 AC092053.2-201ENST00000640557 1818 ntBASIC17.81■□□□□ 0.44
ABCA4P78363 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ABCA4P78363 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ABCA4P78363 NME6-213ENST00000451657 871 ntTSL 2 BASIC17.81■□□□□ 0.44
ABCA4P78363 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC17.81■□□□□ 0.44
ABCA4P78363 OR2A1-AS1-207ENST00000486094 819 ntBASIC17.81■□□□□ 0.44
ABCA4P78363 FAM21FP-204ENST00000608637 956 ntBASIC17.81■□□□□ 0.44
ABCA4P78363 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
ABCA4P78363 AL359736.2-201ENST00000621992 437 ntBASIC17.81■□□□□ 0.44
ABCA4P78363 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
ABCA4P78363 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
ABCA4P78363 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ABCA4P78363 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC17.81■□□□□ 0.44
ABCA4P78363 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC17.81■□□□□ 0.44
ABCA4P78363 KRT17P3-201ENST00000420566 1262 ntBASIC17.81■□□□□ 0.44
ABCA4P78363 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC17.81■□□□□ 0.44
ABCA4P78363 PPOX-219ENST00000544598 813 ntTSL 2 BASIC17.81■□□□□ 0.44
ABCA4P78363 KLF2-202ENST00000592003 564 ntTSL 3 BASIC17.81■□□□□ 0.44
ABCA4P78363 Z99916.2-201ENST00000604037 246 ntBASIC17.81■□□□□ 0.44
ABCA4P78363 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
ABCA4P78363 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ABCA4P78363 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC17.8■□□□□ 0.44
ABCA4P78363 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
ABCA4P78363 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
ABCA4P78363 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
ABCA4P78363 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC17.8■□□□□ 0.44
ABCA4P78363 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC17.8■□□□□ 0.44
ABCA4P78363 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
ABCA4P78363 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC17.8■□□□□ 0.44
ABCA4P78363 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
ABCA4P78363 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ABCA4P78363 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
ABCA4P78363 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
ABCA4P78363 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ABCA4P78363 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
ABCA4P78363 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC17.8■□□□□ 0.44
ABCA4P78363 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ABCA4P78363 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
ABCA4P78363 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC17.79■□□□□ 0.44
ABCA4P78363 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ABCA4P78363 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ABCA4P78363 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
ABCA4P78363 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ABCA4P78363 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
ABCA4P78363 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ABCA4P78363 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ABCA4P78363 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ABCA4P78363 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ABCA4P78363 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC17.79■□□□□ 0.44
ABCA4P78363 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC17.79■□□□□ 0.44
ABCA4P78363 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ABCA4P78363 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ABCA4P78363 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
ABCA4P78363 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ABCA4P78363 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
ABCA4P78363 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ABCA4P78363 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
ABCA4P78363 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ABCA4P78363 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ABCA4P78363 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC17.79■□□□□ 0.44
ABCA4P78363 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ABCA4P78363 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ABCA4P78363 ISG20-202ENST00000379224 540 ntTSL 3 BASIC17.79■□□□□ 0.44
ABCA4P78363 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC17.79■□□□□ 0.44
ABCA4P78363 SNORA78-201ENST00000459373 127 ntBASIC17.79■□□□□ 0.44
ABCA4P78363 SLC29A4P2-201ENST00000504749 1089 ntBASIC17.79■□□□□ 0.44
ABCA4P78363 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC17.79■□□□□ 0.44
ABCA4P78363 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ABCA4P78363 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.79■□□□□ 0.44
ABCA4P78363 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC17.79■□□□□ 0.44
ABCA4P78363 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ABCA4P78363 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
ABCA4P78363 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ABCA4P78363 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ABCA4P78363 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
ABCA4P78363 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ABCA4P78363 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
ABCA4P78363 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms