Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC28.06■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC28.06■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC28.06■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC28.06■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 MIR4651-201ENST00000582622 73 ntBASIC28.06■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC28.06■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC28.05■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC28.05■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC28.05■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC28.05■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC28.05■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 AL034346.1-201ENST00000568244 1277 ntBASIC28.05■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC28.05■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC28.05■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC28.04■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC28.04■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC28.04■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 KRT18P6-201ENST00000555540 1265 ntBASIC28.04■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 CCDC92B-201ENST00000575506 885 ntBASIC28.04■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC28.04■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 AL354811.1-201ENST00000610286 706 ntBASIC28.04■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC28.03■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC28.03■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC28.03■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC28.03■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC28.03■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC28.03■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC28.03■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC28.02■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC28.02■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC28.02■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC28.02■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC28.02■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 KRT18P61-201ENST00000585825 1298 ntBASIC28.02■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC28.02■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 AL358852.1-201ENST00000623174 1268 ntBASIC28.02■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC28.02■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC28.02■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC28.02■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC28.02■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC28.02■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 AC009237.3-201ENST00000393279 1427 ntBASIC28.01■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC28.01■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC28.01■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC28.01■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC28.01■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC28■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC28■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC28■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 AC027612.3-201ENST00000413684 1047 ntBASIC28■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC28■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC28■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC28■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC27.99■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC27.99■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC27.99■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC27.99■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC27.99■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC27.99■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC27.99■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC27.99■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC27.99■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC27.99■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
SENP3-EIF4A1A0A087X0R7 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
Retrieved 100 of 98,524 protein–RNA pairs in 68.8 ms