Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC28.29■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC28.29■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC28.29■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC28.29■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC28.29■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 AICDA-202ENST00000537228 667 ntTSL 5 BASIC28.29■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC28.29■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 PALM-207ENST00000590161 2137 ntTSL 4 BASIC28.29■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 AL024507.2-201ENST00000606070 2574 ntBASIC28.29■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC28.28■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC28.28■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC28.28■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC28.28■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC28.28■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC28.28■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC28.27■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC28.27■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC28.27■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 AP006587.3-201ENST00000525742 1516 ntBASIC28.27■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC28.27■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC28.26■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC28.26■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC28.26■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC28.26■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 AC244015.2-201ENST00000616358 1861 ntBASIC28.26■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC28.26■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC28.26■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC28.26■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC28.26■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 AC026185.1-201ENST00000445748 174 ntBASIC28.26■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 NTF6G-201ENST00000591094 616 ntBASIC28.26■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC28.26■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC28.26■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC28.26■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC28.26■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC28.25■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC28.25■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC28.25■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC28.25■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC28.25■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 GOLGA2P6-201ENST00000340929 2049 ntBASIC28.25■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC28.24■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC28.24■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC28.24■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 RAP2CP1-201ENST00000605103 478 ntBASIC28.24■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC28.24■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC28.23■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC28.23■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC28.23■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 NT5C3AP1-201ENST00000394500 1012 ntBASIC28.23■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 MAP2K4P1-201ENST00000438453 1195 ntBASIC28.23■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 PPP1R14BP3-201ENST00000509033 445 ntBASIC28.23■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC28.23■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC28.23■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC28.22■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC28.22■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC28.22■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC28.22■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 AC012414.1-201ENST00000556676 535 ntBASIC28.22■■■□□ 2.11
SENP3-EIF4A1A0A087X0R7 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms