Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
COL17A1Q9UMD9 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
COL17A1Q9UMD9 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
COL17A1Q9UMD9 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC32.37■■■□□ 2.77
COL17A1Q9UMD9 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
COL17A1Q9UMD9 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
COL17A1Q9UMD9 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
COL17A1Q9UMD9 SOX15-203ENST00000570788 1093 ntBASIC32.37■■■□□ 2.77
COL17A1Q9UMD9 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
COL17A1Q9UMD9 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC32.37■■■□□ 2.77
COL17A1Q9UMD9 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC32.37■■■□□ 2.77
COL17A1Q9UMD9 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC32.37■■■□□ 2.77
COL17A1Q9UMD9 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC32.37■■■□□ 2.77
COL17A1Q9UMD9 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
COL17A1Q9UMD9 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
COL17A1Q9UMD9 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC32.36■■■□□ 2.77
COL17A1Q9UMD9 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
COL17A1Q9UMD9 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC32.36■■■□□ 2.77
COL17A1Q9UMD9 AL353708.3-201ENST00000610272 989 ntBASIC32.36■■■□□ 2.77
COL17A1Q9UMD9 AC113410.3-201ENST00000623366 203 ntBASIC32.36■■■□□ 2.77
COL17A1Q9UMD9 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC32.36■■■□□ 2.77
COL17A1Q9UMD9 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC32.36■■■□□ 2.77
COL17A1Q9UMD9 AC092368.3-202ENST00000574180 1591 ntBASIC32.36■■■□□ 2.77
COL17A1Q9UMD9 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC32.36■■■□□ 2.77
COL17A1Q9UMD9 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC32.36■■■□□ 2.77
COL17A1Q9UMD9 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC32.35■■■□□ 2.77
COL17A1Q9UMD9 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC32.35■■■□□ 2.77
COL17A1Q9UMD9 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC32.35■■■□□ 2.77
COL17A1Q9UMD9 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC32.35■■■□□ 2.77
COL17A1Q9UMD9 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC32.35■■■□□ 2.77
COL17A1Q9UMD9 AP003733.4-201ENST00000623785 1697 ntBASIC32.35■■■□□ 2.77
COL17A1Q9UMD9 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC32.35■■■□□ 2.77
COL17A1Q9UMD9 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC32.35■■■□□ 2.77
COL17A1Q9UMD9 SERF2-207ENST00000409614 582 ntTSL 2 BASIC32.35■■■□□ 2.77
COL17A1Q9UMD9 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC32.35■■■□□ 2.77
COL17A1Q9UMD9 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC32.35■■■□□ 2.77
COL17A1Q9UMD9 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
COL17A1Q9UMD9 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC32.34■■■□□ 2.77
COL17A1Q9UMD9 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC32.34■■■□□ 2.77
COL17A1Q9UMD9 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
COL17A1Q9UMD9 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
COL17A1Q9UMD9 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
COL17A1Q9UMD9 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
COL17A1Q9UMD9 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC32.34■■■□□ 2.77
COL17A1Q9UMD9 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC32.34■■■□□ 2.77
COL17A1Q9UMD9 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC32.34■■■□□ 2.77
COL17A1Q9UMD9 AP006587.3-201ENST00000525742 1516 ntBASIC32.33■■■□□ 2.77
COL17A1Q9UMD9 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC32.33■■■□□ 2.77
COL17A1Q9UMD9 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC32.33■■■□□ 2.77
COL17A1Q9UMD9 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC32.33■■■□□ 2.77
COL17A1Q9UMD9 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC32.33■■■□□ 2.77
COL17A1Q9UMD9 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC32.33■■■□□ 2.77
COL17A1Q9UMD9 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC32.33■■■□□ 2.77
COL17A1Q9UMD9 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC32.33■■■□□ 2.77
COL17A1Q9UMD9 MIR4785-201ENST00000585005 73 ntBASIC32.33■■■□□ 2.77
COL17A1Q9UMD9 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC32.33■■■□□ 2.77
COL17A1Q9UMD9 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC32.32■■■□□ 2.76
COL17A1Q9UMD9 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC32.32■■■□□ 2.76
COL17A1Q9UMD9 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC32.32■■■□□ 2.76
COL17A1Q9UMD9 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC32.32■■■□□ 2.76
COL17A1Q9UMD9 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC32.32■■■□□ 2.76
COL17A1Q9UMD9 TK2-204ENST00000525974 1178 ntTSL 2 BASIC32.32■■■□□ 2.76
COL17A1Q9UMD9 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC32.32■■■□□ 2.76
COL17A1Q9UMD9 H19-210ENST00000439725 1929 ntTSL 2 BASIC32.32■■■□□ 2.76
COL17A1Q9UMD9 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC32.31■■■□□ 2.76
COL17A1Q9UMD9 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC32.31■■■□□ 2.76
COL17A1Q9UMD9 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC32.31■■■□□ 2.76
COL17A1Q9UMD9 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC32.31■■■□□ 2.76
COL17A1Q9UMD9 TPM1-226ENST00000560959 925 ntTSL 2 BASIC32.31■■■□□ 2.76
COL17A1Q9UMD9 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC32.31■■■□□ 2.76
COL17A1Q9UMD9 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC32.31■■■□□ 2.76
COL17A1Q9UMD9 POU5F1P4-201ENST00000413175 1085 ntBASIC32.3■■■□□ 2.76
COL17A1Q9UMD9 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC32.3■■■□□ 2.76
COL17A1Q9UMD9 CD44-222ENST00000526025 1052 ntTSL 2 BASIC32.3■■■□□ 2.76
COL17A1Q9UMD9 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
COL17A1Q9UMD9 KRT16P2-201ENST00000414673 1423 ntBASIC32.3■■■□□ 2.76
COL17A1Q9UMD9 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC32.29■■■□□ 2.76
COL17A1Q9UMD9 AC079089.2-201ENST00000531211 1277 ntBASIC32.29■■■□□ 2.76
COL17A1Q9UMD9 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC32.29■■■□□ 2.76
COL17A1Q9UMD9 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC32.29■■■□□ 2.76
COL17A1Q9UMD9 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC32.29■■■□□ 2.76
COL17A1Q9UMD9 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC32.29■■■□□ 2.76
COL17A1Q9UMD9 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
COL17A1Q9UMD9 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC32.29■■■□□ 2.76
COL17A1Q9UMD9 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC32.29■■■□□ 2.76
COL17A1Q9UMD9 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
COL17A1Q9UMD9 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
COL17A1Q9UMD9 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC32.29■■■□□ 2.76
COL17A1Q9UMD9 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC32.29■■■□□ 2.76
COL17A1Q9UMD9 POM121L13P-201ENST00000422362 380 ntBASIC32.29■■■□□ 2.76
COL17A1Q9UMD9 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC32.29■■■□□ 2.76
COL17A1Q9UMD9 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC32.28■■■□□ 2.76
COL17A1Q9UMD9 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC32.28■■■□□ 2.76
COL17A1Q9UMD9 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
COL17A1Q9UMD9 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC32.28■■■□□ 2.76
COL17A1Q9UMD9 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC32.27■■■□□ 2.76
COL17A1Q9UMD9 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC32.27■■■□□ 2.76
COL17A1Q9UMD9 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC32.27■■■□□ 2.76
COL17A1Q9UMD9 AC124016.1-201ENST00000609552 612 ntBASIC32.27■■■□□ 2.76
COL17A1Q9UMD9 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC32.27■■■□□ 2.76
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms