RNA–Protein interactions for RNA: ENST00000372244.3

TMEM53-205, Transcript of transmembrane protein 53, humanhuman

TSL 2 BASIC

Gene TMEM53, Length 1,472 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM53-205ENST00000372244 NISCHQ9Y2I1 1504 aa48.91■■■■■ 5.42
TMEM53-205ENST00000372244 CCDC180Q9P1Z9 1646 aa43.41■■■■■ 4.54
TMEM53-205ENST00000372244 ABCC9O60706 1549 aa42.73■■■■■ 4.43
TMEM53-205ENST00000372244 RB1CC1Q8TDY2 1594 aa40.99■■■■■ 4.15
TMEM53-205ENST00000372244 DCAF8L2P0C7V8 631 aa40.96■■■■■ 4.15
TMEM53-205ENST00000372244 NACADO15069 1562 aa40.96■■■■■ 4.15
TMEM53-205ENST00000372244 MYO15BQ96JP2 1530 aa40.72■■■■■ 4.11
TMEM53-205ENST00000372244 ZCCHC6Q5VYS8 1495 aaKnown RBP40.67■■■■■ 4.1
TMEM53-205ENST00000372244 DCAF1Q9Y4B6 1507 aa40.46■■■■■ 4.07
TMEM53-205ENST00000372244 PABPN1Q86U42 306 aaKnown RBP eCLIP39.99■■■■□ 3.99
TMEM53-205ENST00000372244 UNC13AQ9UPW8 1703 aa39.98■■■■□ 3.99
TMEM53-205ENST00000372244 BICRAQ9NZM4 1560 aa39.81■■■■□ 3.96
TMEM53-205ENST00000372244 SCRIBQ14160 1630 aa39.61■■■■□ 3.93
TMEM53-205ENST00000372244 DNAJC5BQ9UF47 199 aa39.54■■■■□ 3.92
TMEM53-205ENST00000372244 SHROOM4Q9ULL8 1493 aa39.36■■■■□ 3.89
TMEM53-205ENST00000372244 EIF4G1Q04637 1599 aaKnown RBP38.74■■■■□ 3.79
TMEM53-205ENST00000372244 CC2D2AQ9P2K1 1620 aa38.61■■■■□ 3.77
TMEM53-205ENST00000372244 CECR2Q9BXF3 1484 aa38.43■■■■□ 3.74
TMEM53-205ENST00000372244 SMARCA4P51532 1647 aa37.9■■■■□ 3.66
TMEM53-205ENST00000372244 NCAPD3P42695 1498 aa37.88■■■■□ 3.65
TMEM53-205ENST00000372244 BAZ1AQ9NRL2 1556 aaPredicted RBP37.86■■■■□ 3.65
TMEM53-205ENST00000372244 ATAD2BQ9ULI0 1458 aa37.83■■■■□ 3.65
TMEM53-205ENST00000372244 SMARCA2P51531 1590 aa37.72■■■■□ 3.63
TMEM53-205ENST00000372244 MROH2BQ7Z745 1585 aa37.68■■■■□ 3.62
TMEM53-205ENST00000372244 PEG3Q9GZU2 1588 aa37.6■■■■□ 3.61
TMEM53-205ENST00000372244 HMGXB3Q12766 1538 aa37.57■■■■□ 3.6
TMEM53-205ENST00000372244 BAZ1BQ9UIG0 1483 aaKnown RBP37.45■■■■□ 3.59
TMEM53-205ENST00000372244 RSF1Q96T23 1441 aaPredicted RBP37.25■■■■□ 3.55
TMEM53-205ENST00000372244 WIZO95785 1651 aa37.2■■■■□ 3.54
TMEM53-205ENST00000372244 NESP48681 1621 aa36.94■■■■□ 3.5
TMEM53-205ENST00000372244 TOP2AP11388 1531 aaKnown RBP36.81■■■■□ 3.48
TMEM53-205ENST00000372244 ERCC6Q03468 1493 aa36.81■■■■□ 3.48
TMEM53-205ENST00000372244 LAMC3Q9Y6N6 1575 aa36.79■■■■□ 3.48
TMEM53-205ENST00000372244 CADPSQ9ULU8 1353 aa36.76■■■■□ 3.48
TMEM53-205ENST00000372244 PDS5BQ9NTI5 1447 aa36.62■■■■□ 3.45
TMEM53-205ENST00000372244 CUX2O14529 1486 aa36.52■■■■□ 3.44
TMEM53-205ENST00000372244 CFTRP13569 1480 aa36.49■■■■□ 3.43
TMEM53-205ENST00000372244 CCDC88BA6NC98 1476 aa36.46■■■■□ 3.43
TMEM53-205ENST00000372244 KIF21AQ7Z4S6 1674 aa36.38■■■■□ 3.41
TMEM53-205ENST00000372244 THOC2Q8NI27 1593 aaKnown RBP36.34■■■■□ 3.41
TMEM53-205ENST00000372244 FANCD2Q9BXW9 1451 aa36.27■■■■□ 3.4
TMEM53-205ENST00000372244 MRC2Q9UBG0 1479 aa36.19■■■■□ 3.38
TMEM53-205ENST00000372244 CEP164Q9UPV0 1460 aa36.19■■■■□ 3.38
TMEM53-205ENST00000372244 SUPT5HO00267 1087 aaKnown RBP36.17■■■■□ 3.38
TMEM53-205ENST00000372244 WDR62O43379 1518 aa36.07■■■■□ 3.36
TMEM53-205ENST00000372244 PRDM2Q13029 1718 aa35.97■■■■□ 3.35
TMEM53-205ENST00000372244 URB2Q14146 1524 aaKnown RBP35.92■■■■□ 3.34
TMEM53-205ENST00000372244 DNAJC5Q9H3Z4 198 aa35.73■■■■□ 3.31
TMEM53-205ENST00000372244 ABCC8Q09428 1581 aa35.67■■■■□ 3.3
TMEM53-205ENST00000372244 TOPBP1Q92547 1522 aa35.67■■■■□ 3.3
TMEM53-205ENST00000372244 DNMBPQ6XZF7 1577 aa35.57■■■■□ 3.28
TMEM53-205ENST00000372244 IFT140Q96RY7 1462 aa35.49■■■■□ 3.27
TMEM53-205ENST00000372244 POLA1P09884 1462 aaPredicted RBP35.36■■■■□ 3.25
TMEM53-205ENST00000372244 ZNF608Q9ULD9 1512 aaPredicted RBP35.35■■■■□ 3.25
TMEM53-205ENST00000372244 CUX1P39880 1505 aa35.34■■■■□ 3.25
TMEM53-205ENST00000372244 TARBP1Q13395 1621 aaKnown RBP35.27■■■■□ 3.24
TMEM53-205ENST00000372244 SOGA1O94964 1423 aa35.26■■■■□ 3.24
TMEM53-205ENST00000372244 FGD5Q6ZNL6 1462 aa35.23■■■■□ 3.23
TMEM53-205ENST00000372244 RAD54L2Q9Y4B4 1467 aa35.23■■■■□ 3.23
TMEM53-205ENST00000372244 AQRO60306 1485 aaKnown RBP eCLIP35.16■■■■□ 3.22
TMEM53-205ENST00000372244 EIF4G3O43432 1585 aaKnown RBP35.1■■■■□ 3.21
TMEM53-205ENST00000372244 TDRD9Q8NDG6 1382 aaKnown RBP35.09■■■■□ 3.21
TMEM53-205ENST00000372244 OSCARQ8IYS5 282 aa35.09■■■■□ 3.21
TMEM53-205ENST00000372244 WRNQ14191 1432 aaPredicted RBP eCLIP35.07■■■■□ 3.21
TMEM53-205ENST00000372244 TOP2BQ02880 1626 aa34.97■■■■□ 3.19
TMEM53-205ENST00000372244 WDR97A6NE52 1622 aa34.95■■■■□ 3.19
TMEM53-205ENST00000372244 SYNJ1O43426 1573 aa34.93■■■■□ 3.18
TMEM53-205ENST00000372244 ABCA10Q8WWZ4 1543 aa34.92■■■■□ 3.18
TMEM53-205ENST00000372244 BIVM-ERCC5R4GMW8 1640 aa34.92■■■■□ 3.18
TMEM53-205ENST00000372244 GRIN2BQ13224 1484 aa34.83■■■■□ 3.17
TMEM53-205ENST00000372244 GAPVD1Q14C86 1478 aa34.81■■■■□ 3.16
TMEM53-205ENST00000372244 FBLN2P98095 1184 aa34.77■■■■□ 3.16
TMEM53-205ENST00000372244 SNAPC4Q5SXM2 1469 aa34.76■■■■□ 3.15
TMEM53-205ENST00000372244 MAGI1Q96QZ7 1491 aaPredicted RBP34.74■■■■□ 3.15
TMEM53-205ENST00000372244 ABCA5Q8WWZ7 1642 aa34.71■■■■□ 3.15
TMEM53-205ENST00000372244 CHMP7Q8WUX9 453 aaPredicted RBP34.68■■■■□ 3.14
TMEM53-205ENST00000372244 CHD1O14646 1710 aa34.65■■■■□ 3.14
TMEM53-205ENST00000372244 SYNJ2O15056 1496 aa34.62■■■■□ 3.13
TMEM53-205ENST00000372244 PBRM1Q86U86 1689 aa34.59■■■■□ 3.13
TMEM53-205ENST00000372244 ERICH3Q5RHP9 1530 aa34.47■■■■□ 3.11
TMEM53-205ENST00000372244 FHAD1B1AJZ9 1412 aa34.42■■■■□ 3.1
TMEM53-205ENST00000372244 ARHGEF11O15085 1522 aa34.39■■■■□ 3.1
TMEM53-205ENST00000372244 ADAMTS12P58397 1594 aa34.37■■■■□ 3.09
TMEM53-205ENST00000372244 CLASP1Q7Z460 1538 aa34.37■■■■□ 3.09
TMEM53-205ENST00000372244 TRIM41Q8WV44 630 aa34.37■■■■□ 3.09
TMEM53-205ENST00000372244 RIMBP3CA6NJZ7 1639 aa34.37■■■■□ 3.09
TMEM53-205ENST00000372244 RIMBP3BA6NNM3 1639 aa34.37■■■■□ 3.09
TMEM53-205ENST00000372244 RIMBP3Q9UFD9 1639 aa34.37■■■■□ 3.09
TMEM53-205ENST00000372244 GRIN2AQ12879 1464 aa34.36■■■■□ 3.09
TMEM53-205ENST00000372244 KIF27Q86VH2 1401 aa34.36■■■■□ 3.09
TMEM53-205ENST00000372244 IGF1RP08069 1367 aa34.34■■■■□ 3.09
TMEM53-205ENST00000372244 NUP160Q12769 1436 aa34.26■■■■□ 3.08
TMEM53-205ENST00000372244 CYB5RLQ6IPT4 315 aa34.19■■■■□ 3.06
TMEM53-205ENST00000372244 CEP170Q5SW79 1584 aa34.17■■■■□ 3.06
TMEM53-205ENST00000372244 ARAP1Q96P48 1450 aa34.12■■■■□ 3.05
TMEM53-205ENST00000372244 CARMIL1Q5VZK9 1371 aa34.08■■■■□ 3.05
TMEM53-205ENST00000372244 CUL7Q14999 1698 aa34.04■■■■□ 3.04
TMEM53-205ENST00000372244 RUSC2Q8N2Y8 1516 aa34.02■■■■□ 3.04
TMEM53-205ENST00000372244 JPH4Q96JJ6 628 aa33.99■■■■□ 3.03
TMEM53-205ENST00000372244 SHROOM2Q13796 1616 aa33.95■■■■□ 3.02
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms