Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
VPS9D1Q9Y2B5 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
VPS9D1Q9Y2B5 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
VPS9D1Q9Y2B5 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
VPS9D1Q9Y2B5 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
VPS9D1Q9Y2B5 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.95
VPS9D1Q9Y2B5 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
VPS9D1Q9Y2B5 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
VPS9D1Q9Y2B5 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
VPS9D1Q9Y2B5 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.01■□□□□ 0.95
VPS9D1Q9Y2B5 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS9D1Q9Y2B5 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS9D1Q9Y2B5 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS9D1Q9Y2B5 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC21.01■□□□□ 0.95
VPS9D1Q9Y2B5 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS9D1Q9Y2B5 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS9D1Q9Y2B5 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
VPS9D1Q9Y2B5 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
VPS9D1Q9Y2B5 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
VPS9D1Q9Y2B5 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VPS9D1Q9Y2B5 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
VPS9D1Q9Y2B5 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
VPS9D1Q9Y2B5 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
VPS9D1Q9Y2B5 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VPS9D1Q9Y2B5 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VPS9D1Q9Y2B5 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VPS9D1Q9Y2B5 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
VPS9D1Q9Y2B5 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
VPS9D1Q9Y2B5 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC21■□□□□ 0.95
VPS9D1Q9Y2B5 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS9D1Q9Y2B5 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.99■□□□□ 0.95
VPS9D1Q9Y2B5 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
VPS9D1Q9Y2B5 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC20.99■□□□□ 0.95
VPS9D1Q9Y2B5 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS9D1Q9Y2B5 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS9D1Q9Y2B5 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.99■□□□□ 0.95
VPS9D1Q9Y2B5 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.99■□□□□ 0.95
VPS9D1Q9Y2B5 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC20.99■□□□□ 0.95
VPS9D1Q9Y2B5 AC105265.2-201ENST00000467189 838 ntBASIC20.99■□□□□ 0.95
VPS9D1Q9Y2B5 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
VPS9D1Q9Y2B5 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC20.99■□□□□ 0.95
VPS9D1Q9Y2B5 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
VPS9D1Q9Y2B5 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.99■□□□□ 0.95
VPS9D1Q9Y2B5 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.99■□□□□ 0.95
VPS9D1Q9Y2B5 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.99■□□□□ 0.95
VPS9D1Q9Y2B5 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS9D1Q9Y2B5 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS9D1Q9Y2B5 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS9D1Q9Y2B5 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VPS9D1Q9Y2B5 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS9D1Q9Y2B5 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VPS9D1Q9Y2B5 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
VPS9D1Q9Y2B5 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.98■□□□□ 0.95
VPS9D1Q9Y2B5 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.98■□□□□ 0.95
VPS9D1Q9Y2B5 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.98■□□□□ 0.95
VPS9D1Q9Y2B5 CPT2-209ENST00000636935 803 ntTSL 5 BASIC20.98■□□□□ 0.95
VPS9D1Q9Y2B5 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS9D1Q9Y2B5 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS9D1Q9Y2B5 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS9D1Q9Y2B5 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS9D1Q9Y2B5 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS9D1Q9Y2B5 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS9D1Q9Y2B5 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.98■□□□□ 0.95
VPS9D1Q9Y2B5 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS9D1Q9Y2B5 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.98■□□□□ 0.95
VPS9D1Q9Y2B5 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
VPS9D1Q9Y2B5 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS9D1Q9Y2B5 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VPS9D1Q9Y2B5 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS9D1Q9Y2B5 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.97■□□□□ 0.95
VPS9D1Q9Y2B5 FEM1AP4-201ENST00000443167 1987 ntBASIC20.97■□□□□ 0.95
VPS9D1Q9Y2B5 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.97■□□□□ 0.95
VPS9D1Q9Y2B5 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS9D1Q9Y2B5 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VPS9D1Q9Y2B5 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.97■□□□□ 0.95
VPS9D1Q9Y2B5 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VPS9D1Q9Y2B5 TPRG1LP1-201ENST00000598702 760 ntBASIC20.97■□□□□ 0.95
VPS9D1Q9Y2B5 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS9D1Q9Y2B5 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VPS9D1Q9Y2B5 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
VPS9D1Q9Y2B5 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC20.97■□□□□ 0.95
VPS9D1Q9Y2B5 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.97■□□□□ 0.95
VPS9D1Q9Y2B5 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
VPS9D1Q9Y2B5 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS9D1Q9Y2B5 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VPS9D1Q9Y2B5 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.96■□□□□ 0.95
VPS9D1Q9Y2B5 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS9D1Q9Y2B5 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS9D1Q9Y2B5 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.96■□□□□ 0.95
VPS9D1Q9Y2B5 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.96■□□□□ 0.95
VPS9D1Q9Y2B5 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VPS9D1Q9Y2B5 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS9D1Q9Y2B5 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.96■□□□□ 0.95
VPS9D1Q9Y2B5 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.95■□□□□ 0.95
VPS9D1Q9Y2B5 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
VPS9D1Q9Y2B5 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS9D1Q9Y2B5 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VPS9D1Q9Y2B5 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS9D1Q9Y2B5 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS9D1Q9Y2B5 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms