Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.36■□□□□ 0.85
LSM1O15116 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC20.36■□□□□ 0.85
LSM1O15116 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
LSM1O15116 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.36■□□□□ 0.85
LSM1O15116 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.36■□□□□ 0.85
LSM1O15116 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.36■□□□□ 0.85
LSM1O15116 SMUG1P1-201ENST00000590640 811 ntBASIC20.36■□□□□ 0.85
LSM1O15116 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.36■□□□□ 0.85
LSM1O15116 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.36■□□□□ 0.85
LSM1O15116 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
LSM1O15116 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
LSM1O15116 AL049796.1-201ENST00000565336 1766 ntBASIC20.36■□□□□ 0.85
LSM1O15116 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LSM1O15116 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
LSM1O15116 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LSM1O15116 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.35■□□□□ 0.85
LSM1O15116 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
LSM1O15116 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LSM1O15116 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
LSM1O15116 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LSM1O15116 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
LSM1O15116 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LSM1O15116 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.35■□□□□ 0.85
LSM1O15116 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.35■□□□□ 0.85
LSM1O15116 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.35■□□□□ 0.85
LSM1O15116 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.35■□□□□ 0.85
LSM1O15116 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LSM1O15116 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
LSM1O15116 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LSM1O15116 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.34■□□□□ 0.85
LSM1O15116 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LSM1O15116 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
LSM1O15116 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.34■□□□□ 0.85
LSM1O15116 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
LSM1O15116 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
LSM1O15116 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
LSM1O15116 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LSM1O15116 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LSM1O15116 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
LSM1O15116 UNC93B3-201ENST00000308076 687 ntBASIC20.34■□□□□ 0.85
LSM1O15116 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LSM1O15116 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
LSM1O15116 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.34■□□□□ 0.85
LSM1O15116 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC20.34■□□□□ 0.85
LSM1O15116 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
LSM1O15116 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC20.34■□□□□ 0.85
LSM1O15116 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
LSM1O15116 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
LSM1O15116 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LSM1O15116 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LSM1O15116 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
LSM1O15116 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
LSM1O15116 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LSM1O15116 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LSM1O15116 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LSM1O15116 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LSM1O15116 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LSM1O15116 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LSM1O15116 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
LSM1O15116 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
LSM1O15116 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LSM1O15116 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.34■□□□□ 0.85
LSM1O15116 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
LSM1O15116 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
LSM1O15116 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LSM1O15116 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
LSM1O15116 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.33■□□□□ 0.85
LSM1O15116 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
LSM1O15116 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
LSM1O15116 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.33■□□□□ 0.84
LSM1O15116 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.33■□□□□ 0.84
LSM1O15116 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
LSM1O15116 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
LSM1O15116 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
LSM1O15116 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
LSM1O15116 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LSM1O15116 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LSM1O15116 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LSM1O15116 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LSM1O15116 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LSM1O15116 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
LSM1O15116 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
LSM1O15116 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LSM1O15116 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LSM1O15116 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
LSM1O15116 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LSM1O15116 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LSM1O15116 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LSM1O15116 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
LSM1O15116 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LSM1O15116 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LSM1O15116 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LSM1O15116 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
LSM1O15116 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
LSM1O15116 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LSM1O15116 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.31■□□□□ 0.84
LSM1O15116 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.31■□□□□ 0.84
LSM1O15116 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC20.31■□□□□ 0.84
LSM1O15116 AC233992.3-201ENST00000607491 485 ntBASIC20.31■□□□□ 0.84
LSM1O15116 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms