Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 MFF-203ENST00000349901 1716 ntTSL 2 BASIC21.14■□□□□ 0.97
VPS9D1Q9Y2B5 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
VPS9D1Q9Y2B5 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC21.14■□□□□ 0.97
VPS9D1Q9Y2B5 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
VPS9D1Q9Y2B5 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC21.14■□□□□ 0.97
VPS9D1Q9Y2B5 BX005040.4-201ENST00000637145 1518 ntBASIC21.14■□□□□ 0.97
VPS9D1Q9Y2B5 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
VPS9D1Q9Y2B5 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC21.13■□□□□ 0.97
VPS9D1Q9Y2B5 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC21.13■□□□□ 0.97
VPS9D1Q9Y2B5 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
VPS9D1Q9Y2B5 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC21.13■□□□□ 0.97
VPS9D1Q9Y2B5 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
VPS9D1Q9Y2B5 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC21.13■□□□□ 0.97
VPS9D1Q9Y2B5 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VPS9D1Q9Y2B5 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VPS9D1Q9Y2B5 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VPS9D1Q9Y2B5 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
VPS9D1Q9Y2B5 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
VPS9D1Q9Y2B5 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC21.12■□□□□ 0.97
VPS9D1Q9Y2B5 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VPS9D1Q9Y2B5 MPST-204ENST00000404393 1329 ntTSL 5 BASIC21.12■□□□□ 0.97
VPS9D1Q9Y2B5 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
VPS9D1Q9Y2B5 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VPS9D1Q9Y2B5 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VPS9D1Q9Y2B5 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.12■□□□□ 0.97
VPS9D1Q9Y2B5 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC21.12■□□□□ 0.97
VPS9D1Q9Y2B5 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC21.12■□□□□ 0.97
VPS9D1Q9Y2B5 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC21.12■□□□□ 0.97
VPS9D1Q9Y2B5 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC21.12■□□□□ 0.97
VPS9D1Q9Y2B5 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VPS9D1Q9Y2B5 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VPS9D1Q9Y2B5 Z98882.1-201ENST00000622160 2253 ntBASIC21.12■□□□□ 0.97
VPS9D1Q9Y2B5 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC21.12■□□□□ 0.97
VPS9D1Q9Y2B5 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC21.12■□□□□ 0.97
VPS9D1Q9Y2B5 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VPS9D1Q9Y2B5 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VPS9D1Q9Y2B5 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS9D1Q9Y2B5 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS9D1Q9Y2B5 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC21.11■□□□□ 0.97
VPS9D1Q9Y2B5 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VPS9D1Q9Y2B5 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC21.11■□□□□ 0.97
VPS9D1Q9Y2B5 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS9D1Q9Y2B5 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VPS9D1Q9Y2B5 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC21.11■□□□□ 0.97
VPS9D1Q9Y2B5 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC21.11■□□□□ 0.97
VPS9D1Q9Y2B5 AL354811.1-201ENST00000610286 706 ntBASIC21.11■□□□□ 0.97
VPS9D1Q9Y2B5 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
VPS9D1Q9Y2B5 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC21.11■□□□□ 0.97
VPS9D1Q9Y2B5 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC21.1■□□□□ 0.97
VPS9D1Q9Y2B5 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC21.1■□□□□ 0.97
VPS9D1Q9Y2B5 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.1■□□□□ 0.97
VPS9D1Q9Y2B5 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS9D1Q9Y2B5 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC21.1■□□□□ 0.97
VPS9D1Q9Y2B5 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS9D1Q9Y2B5 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
VPS9D1Q9Y2B5 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS9D1Q9Y2B5 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
VPS9D1Q9Y2B5 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC21.1■□□□□ 0.97
VPS9D1Q9Y2B5 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS9D1Q9Y2B5 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS9D1Q9Y2B5 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC21.1■□□□□ 0.97
VPS9D1Q9Y2B5 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC21.1■□□□□ 0.97
VPS9D1Q9Y2B5 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
VPS9D1Q9Y2B5 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC21.1■□□□□ 0.97
VPS9D1Q9Y2B5 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC21.1■□□□□ 0.97
VPS9D1Q9Y2B5 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS9D1Q9Y2B5 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC21.1■□□□□ 0.97
VPS9D1Q9Y2B5 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC21.09■□□□□ 0.97
VPS9D1Q9Y2B5 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS9D1Q9Y2B5 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
VPS9D1Q9Y2B5 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VPS9D1Q9Y2B5 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC21.09■□□□□ 0.97
VPS9D1Q9Y2B5 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VPS9D1Q9Y2B5 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VPS9D1Q9Y2B5 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS9D1Q9Y2B5 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC21.09■□□□□ 0.97
VPS9D1Q9Y2B5 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC21.09■□□□□ 0.97
VPS9D1Q9Y2B5 AC012414.1-201ENST00000556676 535 ntBASIC21.09■□□□□ 0.97
VPS9D1Q9Y2B5 AC005837.3-201ENST00000612163 286 ntBASIC21.09■□□□□ 0.97
VPS9D1Q9Y2B5 AL358852.1-201ENST00000623174 1268 ntBASIC21.09■□□□□ 0.97
VPS9D1Q9Y2B5 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS9D1Q9Y2B5 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS9D1Q9Y2B5 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC21.09■□□□□ 0.97
VPS9D1Q9Y2B5 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS9D1Q9Y2B5 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC21.09■□□□□ 0.97
VPS9D1Q9Y2B5 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS9D1Q9Y2B5 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
VPS9D1Q9Y2B5 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS9D1Q9Y2B5 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS9D1Q9Y2B5 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VPS9D1Q9Y2B5 AC005224.4-201ENST00000583262 1652 ntBASIC21.09■□□□□ 0.97
VPS9D1Q9Y2B5 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
VPS9D1Q9Y2B5 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC21.08■□□□□ 0.97
VPS9D1Q9Y2B5 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC21.08■□□□□ 0.97
VPS9D1Q9Y2B5 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
VPS9D1Q9Y2B5 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC21.08■□□□□ 0.97
VPS9D1Q9Y2B5 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
VPS9D1Q9Y2B5 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
VPS9D1Q9Y2B5 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC21.08■□□□□ 0.96
VPS9D1Q9Y2B5 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC21.08■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms