Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC32.7■■■□□ 2.82
COL17A1Q9UMD9 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC32.69■■■□□ 2.82
COL17A1Q9UMD9 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
COL17A1Q9UMD9 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC32.69■■■□□ 2.82
COL17A1Q9UMD9 SERPINH1P1-201ENST00000419794 1249 ntBASIC32.69■■■□□ 2.82
COL17A1Q9UMD9 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC32.69■■■□□ 2.82
COL17A1Q9UMD9 TSPY7P-201ENST00000431358 1114 ntBASIC32.69■■■□□ 2.82
COL17A1Q9UMD9 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC32.69■■■□□ 2.82
COL17A1Q9UMD9 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC32.69■■■□□ 2.82
COL17A1Q9UMD9 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC32.69■■■□□ 2.82
COL17A1Q9UMD9 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC32.69■■■□□ 2.82
COL17A1Q9UMD9 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC32.69■■■□□ 2.82
COL17A1Q9UMD9 AC133561.5-201ENST00000635547 218 ntBASIC32.69■■■□□ 2.82
COL17A1Q9UMD9 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
COL17A1Q9UMD9 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC32.69■■■□□ 2.82
COL17A1Q9UMD9 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
COL17A1Q9UMD9 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC32.68■■■□□ 2.82
COL17A1Q9UMD9 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC32.68■■■□□ 2.82
COL17A1Q9UMD9 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC32.68■■■□□ 2.82
COL17A1Q9UMD9 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC32.68■■■□□ 2.82
COL17A1Q9UMD9 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC32.67■■■□□ 2.82
COL17A1Q9UMD9 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC32.67■■■□□ 2.82
COL17A1Q9UMD9 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC32.67■■■□□ 2.82
COL17A1Q9UMD9 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
COL17A1Q9UMD9 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
COL17A1Q9UMD9 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
COL17A1Q9UMD9 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC32.66■■■□□ 2.82
COL17A1Q9UMD9 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC32.66■■■□□ 2.82
COL17A1Q9UMD9 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC32.66■■■□□ 2.82
COL17A1Q9UMD9 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
COL17A1Q9UMD9 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC32.65■■■□□ 2.82
COL17A1Q9UMD9 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC32.65■■■□□ 2.82
COL17A1Q9UMD9 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
COL17A1Q9UMD9 AC012618.2-201ENST00000428058 849 ntBASIC32.65■■■□□ 2.82
COL17A1Q9UMD9 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC32.65■■■□□ 2.82
COL17A1Q9UMD9 AC233702.5-201ENST00000584107 538 ntBASIC32.65■■■□□ 2.82
COL17A1Q9UMD9 KRT17P1-201ENST00000399211 1546 ntBASIC32.64■■■□□ 2.82
COL17A1Q9UMD9 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC32.64■■■□□ 2.82
COL17A1Q9UMD9 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
COL17A1Q9UMD9 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
COL17A1Q9UMD9 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC32.64■■■□□ 2.82
COL17A1Q9UMD9 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC32.64■■■□□ 2.82
COL17A1Q9UMD9 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC32.64■■■□□ 2.82
COL17A1Q9UMD9 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC32.64■■■□□ 2.82
COL17A1Q9UMD9 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.81
COL17A1Q9UMD9 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
COL17A1Q9UMD9 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC32.63■■■□□ 2.81
COL17A1Q9UMD9 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC32.63■■■□□ 2.81
COL17A1Q9UMD9 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC32.62■■■□□ 2.81
COL17A1Q9UMD9 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
COL17A1Q9UMD9 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
COL17A1Q9UMD9 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC32.62■■■□□ 2.81
COL17A1Q9UMD9 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC32.62■■■□□ 2.81
COL17A1Q9UMD9 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
COL17A1Q9UMD9 FGF8-207ENST00000618991 856 ntTSL 3 BASIC32.62■■■□□ 2.81
COL17A1Q9UMD9 HLA-B-256ENST00000639848 1089 ntBASIC32.62■■■□□ 2.81
COL17A1Q9UMD9 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC32.62■■■□□ 2.81
COL17A1Q9UMD9 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
COL17A1Q9UMD9 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
COL17A1Q9UMD9 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
COL17A1Q9UMD9 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC32.61■■■□□ 2.81
COL17A1Q9UMD9 FXN-202ENST00000396364 980 ntTSL 5 BASIC32.61■■■□□ 2.81
COL17A1Q9UMD9 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
COL17A1Q9UMD9 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC32.61■■■□□ 2.81
COL17A1Q9UMD9 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC32.61■■■□□ 2.81
COL17A1Q9UMD9 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC32.61■■■□□ 2.81
COL17A1Q9UMD9 AC069544.1-201ENST00000609399 999 ntBASIC32.61■■■□□ 2.81
COL17A1Q9UMD9 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
COL17A1Q9UMD9 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
COL17A1Q9UMD9 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC32.61■■■□□ 2.81
COL17A1Q9UMD9 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
COL17A1Q9UMD9 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
COL17A1Q9UMD9 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC32.61■■■□□ 2.81
COL17A1Q9UMD9 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC32.61■■■□□ 2.81
COL17A1Q9UMD9 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC32.61■■■□□ 2.81
COL17A1Q9UMD9 AC053503.5-201ENST00000601508 636 ntBASIC32.61■■■□□ 2.81
COL17A1Q9UMD9 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
COL17A1Q9UMD9 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC32.6■■■□□ 2.81
COL17A1Q9UMD9 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC32.6■■■□□ 2.81
COL17A1Q9UMD9 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC32.6■■■□□ 2.81
COL17A1Q9UMD9 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC32.6■■■□□ 2.81
COL17A1Q9UMD9 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC32.6■■■□□ 2.81
COL17A1Q9UMD9 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC32.6■■■□□ 2.81
COL17A1Q9UMD9 LINC00543-201ENST00000567234 1845 ntBASIC32.6■■■□□ 2.81
COL17A1Q9UMD9 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
COL17A1Q9UMD9 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC32.6■■■□□ 2.81
COL17A1Q9UMD9 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC32.6■■■□□ 2.81
COL17A1Q9UMD9 NME6-213ENST00000451657 871 ntTSL 2 BASIC32.6■■■□□ 2.81
COL17A1Q9UMD9 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC32.6■■■□□ 2.81
COL17A1Q9UMD9 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC32.6■■■□□ 2.81
COL17A1Q9UMD9 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC32.6■■■□□ 2.81
COL17A1Q9UMD9 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC32.6■■■□□ 2.81
COL17A1Q9UMD9 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
COL17A1Q9UMD9 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC32.59■■■□□ 2.81
COL17A1Q9UMD9 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC32.59■■■□□ 2.81
COL17A1Q9UMD9 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC32.59■■■□□ 2.81
COL17A1Q9UMD9 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC32.59■■■□□ 2.81
COL17A1Q9UMD9 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC32.59■■■□□ 2.81
COL17A1Q9UMD9 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC32.59■■■□□ 2.81
COL17A1Q9UMD9 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC32.59■■■□□ 2.81
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms