RNA–Protein interactions for RNA: ENST00000488594.5

GGPS1-206, Transcript of geranylgeranyl diphosphate synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GGPS1, Length 1,396 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGPS1-206ENST00000488594 NISCHQ9Y2I1 1504 aa48.06■■■■■ 5.28
GGPS1-206ENST00000488594 ABCC9O60706 1549 aa43.41■■■■■ 4.54
GGPS1-206ENST00000488594 CCDC180Q9P1Z9 1646 aa43.21■■■■■ 4.51
GGPS1-206ENST00000488594 RB1CC1Q8TDY2 1594 aa41.27■■■■■ 4.2
GGPS1-206ENST00000488594 NACADO15069 1562 aa40.95■■■■■ 4.15
GGPS1-206ENST00000488594 DNAJC5BQ9UF47 199 aa40.89■■■■■ 4.14
GGPS1-206ENST00000488594 DCAF8L2P0C7V8 631 aa40.64■■■■■ 4.1
GGPS1-206ENST00000488594 PABPN1Q86U42 306 aaKnown RBP eCLIP40.37■■■■■ 4.05
GGPS1-206ENST00000488594 MYO15BQ96JP2 1530 aa40.36■■■■■ 4.05
GGPS1-206ENST00000488594 UNC13AQ9UPW8 1703 aa40.18■■■■■ 4.02
GGPS1-206ENST00000488594 BICRAQ9NZM4 1560 aa40.01■■■■■ 4
GGPS1-206ENST00000488594 ZCCHC6Q5VYS8 1495 aaKnown RBP39.79■■■■□ 3.96
GGPS1-206ENST00000488594 DCAF1Q9Y4B6 1507 aa39.74■■■■□ 3.95
GGPS1-206ENST00000488594 SHROOM4Q9ULL8 1493 aa39.6■■■■□ 3.93
GGPS1-206ENST00000488594 SCRIBQ14160 1630 aa39.31■■■■□ 3.88
GGPS1-206ENST00000488594 CC2D2AQ9P2K1 1620 aa39.19■■■■□ 3.86
GGPS1-206ENST00000488594 CECR2Q9BXF3 1484 aa39.16■■■■□ 3.86
GGPS1-206ENST00000488594 EIF4G1Q04637 1599 aaKnown RBP39.08■■■■□ 3.85
GGPS1-206ENST00000488594 NCAPD3P42695 1498 aa37.82■■■■□ 3.65
GGPS1-206ENST00000488594 DNAJC5Q9H3Z4 198 aa37.8■■■■□ 3.64
GGPS1-206ENST00000488594 ATAD2BQ9ULI0 1458 aa37.64■■■■□ 3.62
GGPS1-206ENST00000488594 CUX2O14529 1486 aa37.58■■■■□ 3.61
GGPS1-206ENST00000488594 SMARCA2P51531 1590 aa37.55■■■■□ 3.6
GGPS1-206ENST00000488594 ERCC6Q03468 1493 aa37.54■■■■□ 3.6
GGPS1-206ENST00000488594 SMARCA4P51532 1647 aa37.51■■■■□ 3.59
GGPS1-206ENST00000488594 HMGXB3Q12766 1538 aa37.5■■■■□ 3.59
GGPS1-206ENST00000488594 BAZ1AQ9NRL2 1556 aaPredicted RBP37.34■■■■□ 3.57
GGPS1-206ENST00000488594 BAZ1BQ9UIG0 1483 aaKnown RBP37.27■■■■□ 3.56
GGPS1-206ENST00000488594 PEG3Q9GZU2 1588 aa37.19■■■■□ 3.54
GGPS1-206ENST00000488594 NESP48681 1621 aa37.19■■■■□ 3.54
GGPS1-206ENST00000488594 MROH2BQ7Z745 1585 aa36.99■■■■□ 3.51
GGPS1-206ENST00000488594 LAMC3Q9Y6N6 1575 aa36.98■■■■□ 3.51
GGPS1-206ENST00000488594 THOC2Q8NI27 1593 aaKnown RBP36.88■■■■□ 3.49
GGPS1-206ENST00000488594 PDS5BQ9NTI5 1447 aa36.81■■■■□ 3.48
GGPS1-206ENST00000488594 KIF21AQ7Z4S6 1674 aa36.67■■■■□ 3.46
GGPS1-206ENST00000488594 CADPSQ9ULU8 1353 aa36.65■■■■□ 3.46
GGPS1-206ENST00000488594 WIZO95785 1651 aa36.49■■■■□ 3.43
GGPS1-206ENST00000488594 MRC2Q9UBG0 1479 aa36.47■■■■□ 3.43
GGPS1-206ENST00000488594 WDR62O43379 1518 aa36.38■■■■□ 3.41
GGPS1-206ENST00000488594 CEP164Q9UPV0 1460 aa36.29■■■■□ 3.4
GGPS1-206ENST00000488594 FANCD2Q9BXW9 1451 aa36.21■■■■□ 3.39
GGPS1-206ENST00000488594 RSF1Q96T23 1441 aaPredicted RBP36.18■■■■□ 3.38
GGPS1-206ENST00000488594 CFTRP13569 1480 aa36.18■■■■□ 3.38
GGPS1-206ENST00000488594 TOP2AP11388 1531 aaKnown RBP36.1■■■■□ 3.37
GGPS1-206ENST00000488594 TRIM41Q8WV44 630 aa36■■■■□ 3.35
GGPS1-206ENST00000488594 URB2Q14146 1524 aaKnown RBP35.89■■■■□ 3.34
GGPS1-206ENST00000488594 OSCARQ8IYS5 282 aa35.84■■■■□ 3.33
GGPS1-206ENST00000488594 PRDM2Q13029 1718 aa35.69■■■■□ 3.3
GGPS1-206ENST00000488594 CCDC88BA6NC98 1476 aa35.68■■■■□ 3.3
GGPS1-206ENST00000488594 IFT140Q96RY7 1462 aa35.59■■■■□ 3.29
GGPS1-206ENST00000488594 TOPBP1Q92547 1522 aa35.49■■■■□ 3.27
GGPS1-206ENST00000488594 ZNF608Q9ULD9 1512 aaPredicted RBP35.48■■■■□ 3.27
GGPS1-206ENST00000488594 ABCC8Q09428 1581 aa35.48■■■■□ 3.27
GGPS1-206ENST00000488594 DNMBPQ6XZF7 1577 aa35.34■■■■□ 3.25
GGPS1-206ENST00000488594 RIMBP3CA6NJZ7 1639 aa35.29■■■■□ 3.24
GGPS1-206ENST00000488594 RIMBP3BA6NNM3 1639 aa35.29■■■■□ 3.24
GGPS1-206ENST00000488594 RIMBP3Q9UFD9 1639 aa35.29■■■■□ 3.24
GGPS1-206ENST00000488594 EIF4G3O43432 1585 aaKnown RBP35.27■■■■□ 3.24
GGPS1-206ENST00000488594 ARHGEF11O15085 1522 aa35.2■■■■□ 3.23
GGPS1-206ENST00000488594 TARBP1Q13395 1621 aaKnown RBP35.16■■■■□ 3.22
GGPS1-206ENST00000488594 AQRO60306 1485 aaKnown RBP eCLIP35.15■■■■□ 3.22
GGPS1-206ENST00000488594 POLA1P09884 1462 aaPredicted RBP35.12■■■■□ 3.21
GGPS1-206ENST00000488594 CHD1O14646 1710 aa35■■■■□ 3.19
GGPS1-206ENST00000488594 SOGA1O94964 1423 aa34.98■■■■□ 3.19
GGPS1-206ENST00000488594 FBLN2P98095 1184 aa34.98■■■■□ 3.19
GGPS1-206ENST00000488594 CYB5RLQ6IPT4 315 aa34.97■■■■□ 3.19
GGPS1-206ENST00000488594 RAD54L2Q9Y4B4 1467 aa34.96■■■■□ 3.19
GGPS1-206ENST00000488594 TDRD9Q8NDG6 1382 aaKnown RBP34.91■■■■□ 3.18
GGPS1-206ENST00000488594 WDR97A6NE52 1622 aa34.87■■■■□ 3.17
GGPS1-206ENST00000488594 FGD5Q6ZNL6 1462 aa34.86■■■■□ 3.17
GGPS1-206ENST00000488594 ARAP1Q96P48 1450 aa34.84■■■■□ 3.17
GGPS1-206ENST00000488594 SNAPC4Q5SXM2 1469 aa34.79■■■■□ 3.16
GGPS1-206ENST00000488594 CUX1P39880 1505 aa34.77■■■■□ 3.16
GGPS1-206ENST00000488594 MAGI1Q96QZ7 1491 aaPredicted RBP34.74■■■■□ 3.15
GGPS1-206ENST00000488594 CHMP7Q8WUX9 453 aaPredicted RBP34.73■■■■□ 3.15
GGPS1-206ENST00000488594 GRIN2BQ13224 1484 aa34.71■■■■□ 3.15
GGPS1-206ENST00000488594 CLASP1Q7Z460 1538 aa34.67■■■■□ 3.14
GGPS1-206ENST00000488594 TRHP20396 242 aaPredicted RBP34.66■■■■□ 3.14
GGPS1-206ENST00000488594 SYNJ1O43426 1573 aa34.66■■■■□ 3.14
GGPS1-206ENST00000488594 SYNJ2O15056 1496 aa34.62■■■■□ 3.13
GGPS1-206ENST00000488594 GAPVD1Q14C86 1478 aa34.54■■■■□ 3.12
GGPS1-206ENST00000488594 ABCA10Q8WWZ4 1543 aa34.48■■■■□ 3.11
GGPS1-206ENST00000488594 PBRM1Q86U86 1689 aa34.44■■■■□ 3.1
GGPS1-206ENST00000488594 ABCA5Q8WWZ7 1642 aa34.4■■■■□ 3.1
GGPS1-206ENST00000488594 SUPT5HO00267 1087 aaKnown RBP34.37■■■■□ 3.09
GGPS1-206ENST00000488594 WRNQ14191 1432 aaPredicted RBP eCLIP34.33■■■■□ 3.09
GGPS1-206ENST00000488594 GRIN2AQ12879 1464 aa34.24■■■■□ 3.07
GGPS1-206ENST00000488594 TOP2BQ02880 1626 aa34.17■■■■□ 3.06
GGPS1-206ENST00000488594 ADAMTS12P58397 1594 aa34.16■■■■□ 3.06
GGPS1-206ENST00000488594 BIVM-ERCC5R4GMW8 1640 aa34.15■■■■□ 3.06
GGPS1-206ENST00000488594 NUP160Q12769 1436 aa34.15■■■■□ 3.06
GGPS1-206ENST00000488594 FHAD1B1AJZ9 1412 aa34.12■■■■□ 3.05
GGPS1-206ENST00000488594 CEP170Q5SW79 1584 aa34.09■■■■□ 3.05
GGPS1-206ENST00000488594 ERICH3Q5RHP9 1530 aa34.05■■■■□ 3.04
GGPS1-206ENST00000488594 ERCC6L2Q5T890 1561 aa34.05■■■■□ 3.04
GGPS1-206ENST00000488594 SHROOM2Q13796 1616 aa33.98■■■■□ 3.03
GGPS1-206ENST00000488594 AEBP2Q6ZN18 517 aaPredicted RBP33.84■■■■□ 3.01
GGPS1-206ENST00000488594 PRG4Q92954 1404 aaPredicted RBP33.83■■■■□ 3.01
GGPS1-206ENST00000488594 JPH4Q96JJ6 628 aa33.81■■■■□ 3
GGPS1-206ENST00000488594 RUSC2Q8N2Y8 1516 aa33.69■■■□□ 2.98
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms