RNA–Protein interactions for RNA: ENST00000395194.1

COL11A2-204, Transcript of collagen type XI alpha 2 chain, humanhuman

TSL 1 (best) BASIC

Gene COL11A2, Length 1,194 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A2-204ENST00000395194 NISCHQ9Y2I1 1504 aa48.25■■■■■ 5.31
COL11A2-204ENST00000395194 ABCC9O60706 1549 aa43.32■■■■■ 4.53
COL11A2-204ENST00000395194 CCDC180Q9P1Z9 1646 aa43.3■■■■■ 4.52
COL11A2-204ENST00000395194 RB1CC1Q8TDY2 1594 aa41.18■■■■■ 4.18
COL11A2-204ENST00000395194 NACADO15069 1562 aa40.87■■■■■ 4.13
COL11A2-204ENST00000395194 DCAF8L2P0C7V8 631 aa40.8■■■■■ 4.12
COL11A2-204ENST00000395194 DNAJC5BQ9UF47 199 aa40.55■■■■■ 4.08
COL11A2-204ENST00000395194 UNC13AQ9UPW8 1703 aa40.39■■■■■ 4.06
COL11A2-204ENST00000395194 PABPN1Q86U42 306 aaKnown RBP eCLIP40.33■■■■■ 4.05
COL11A2-204ENST00000395194 MYO15BQ96JP2 1530 aa40.23■■■■■ 4.03
COL11A2-204ENST00000395194 BICRAQ9NZM4 1560 aa40.01■■■■■ 4
COL11A2-204ENST00000395194 ZCCHC6Q5VYS8 1495 aaKnown RBP40■■■■□ 3.99
COL11A2-204ENST00000395194 DCAF1Q9Y4B6 1507 aa39.77■■■■□ 3.96
COL11A2-204ENST00000395194 SCRIBQ14160 1630 aa39.56■■■■□ 3.92
COL11A2-204ENST00000395194 SHROOM4Q9ULL8 1493 aa39.33■■■■□ 3.89
COL11A2-204ENST00000395194 CC2D2AQ9P2K1 1620 aa39.13■■■■□ 3.85
COL11A2-204ENST00000395194 EIF4G1Q04637 1599 aaKnown RBP39.03■■■■□ 3.84
COL11A2-204ENST00000395194 CECR2Q9BXF3 1484 aa38.97■■■■□ 3.83
COL11A2-204ENST00000395194 NCAPD3P42695 1498 aa37.71■■■■□ 3.63
COL11A2-204ENST00000395194 SMARCA4P51532 1647 aa37.68■■■■□ 3.62
COL11A2-204ENST00000395194 ATAD2BQ9ULI0 1458 aa37.65■■■■□ 3.62
COL11A2-204ENST00000395194 SMARCA2P51531 1590 aa37.55■■■■□ 3.6
COL11A2-204ENST00000395194 HMGXB3Q12766 1538 aa37.47■■■■□ 3.59
COL11A2-204ENST00000395194 BAZ1AQ9NRL2 1556 aaPredicted RBP37.45■■■■□ 3.59
COL11A2-204ENST00000395194 ERCC6Q03468 1493 aa37.39■■■■□ 3.58
COL11A2-204ENST00000395194 BAZ1BQ9UIG0 1483 aaKnown RBP37.32■■■■□ 3.56
COL11A2-204ENST00000395194 NESP48681 1621 aa37.24■■■■□ 3.55
COL11A2-204ENST00000395194 PEG3Q9GZU2 1588 aa37.23■■■■□ 3.55
COL11A2-204ENST00000395194 MROH2BQ7Z745 1585 aa37.22■■■■□ 3.55
COL11A2-204ENST00000395194 CUX2O14529 1486 aa37.21■■■■□ 3.55
COL11A2-204ENST00000395194 DNAJC5Q9H3Z4 198 aa37.12■■■■□ 3.53
COL11A2-204ENST00000395194 LAMC3Q9Y6N6 1575 aa36.9■■■■□ 3.5
COL11A2-204ENST00000395194 THOC2Q8NI27 1593 aaKnown RBP36.84■■■■□ 3.49
COL11A2-204ENST00000395194 WIZO95785 1651 aa36.83■■■■□ 3.49
COL11A2-204ENST00000395194 KIF21AQ7Z4S6 1674 aa36.81■■■■□ 3.48
COL11A2-204ENST00000395194 PDS5BQ9NTI5 1447 aa36.66■■■■□ 3.46
COL11A2-204ENST00000395194 CADPSQ9ULU8 1353 aa36.58■■■■□ 3.45
COL11A2-204ENST00000395194 RSF1Q96T23 1441 aaPredicted RBP36.42■■■■□ 3.42
COL11A2-204ENST00000395194 MRC2Q9UBG0 1479 aa36.38■■■■□ 3.41
COL11A2-204ENST00000395194 TOP2AP11388 1531 aaKnown RBP36.3■■■■□ 3.4
COL11A2-204ENST00000395194 WDR62O43379 1518 aa36.29■■■■□ 3.4
COL11A2-204ENST00000395194 CEP164Q9UPV0 1460 aa36.26■■■■□ 3.4
COL11A2-204ENST00000395194 FANCD2Q9BXW9 1451 aa36.23■■■■□ 3.39
COL11A2-204ENST00000395194 CFTRP13569 1480 aa36.18■■■■□ 3.38
COL11A2-204ENST00000395194 PRDM2Q13029 1718 aa35.96■■■■□ 3.35
COL11A2-204ENST00000395194 URB2Q14146 1524 aaKnown RBP35.94■■■■□ 3.34
COL11A2-204ENST00000395194 CCDC88BA6NC98 1476 aa35.88■■■■□ 3.33
COL11A2-204ENST00000395194 TRIM41Q8WV44 630 aa35.67■■■■□ 3.3
COL11A2-204ENST00000395194 TOPBP1Q92547 1522 aa35.56■■■■□ 3.28
COL11A2-204ENST00000395194 OSCARQ8IYS5 282 aa35.51■■■■□ 3.28
COL11A2-204ENST00000395194 ZNF608Q9ULD9 1512 aaPredicted RBP35.51■■■■□ 3.27
COL11A2-204ENST00000395194 IFT140Q96RY7 1462 aa35.49■■■■□ 3.27
COL11A2-204ENST00000395194 DNMBPQ6XZF7 1577 aa35.42■■■■□ 3.26
COL11A2-204ENST00000395194 ABCC8Q09428 1581 aa35.38■■■■□ 3.25
COL11A2-204ENST00000395194 EIF4G3O43432 1585 aaKnown RBP35.34■■■■□ 3.25
COL11A2-204ENST00000395194 TARBP1Q13395 1621 aaKnown RBP35.24■■■■□ 3.23
COL11A2-204ENST00000395194 POLA1P09884 1462 aaPredicted RBP35.2■■■■□ 3.23
COL11A2-204ENST00000395194 AQRO60306 1485 aaKnown RBP eCLIP35.18■■■■□ 3.22
COL11A2-204ENST00000395194 RIMBP3CA6NJZ7 1639 aa35.17■■■■□ 3.22
COL11A2-204ENST00000395194 RIMBP3BA6NNM3 1639 aa35.17■■■■□ 3.22
COL11A2-204ENST00000395194 RIMBP3Q9UFD9 1639 aa35.17■■■■□ 3.22
COL11A2-204ENST00000395194 CHD1O14646 1710 aa35.12■■■■□ 3.21
COL11A2-204ENST00000395194 RAD54L2Q9Y4B4 1467 aa35.1■■■■□ 3.21
COL11A2-204ENST00000395194 ARHGEF11O15085 1522 aa35.02■■■■□ 3.2
COL11A2-204ENST00000395194 SOGA1O94964 1423 aa35■■■■□ 3.19
COL11A2-204ENST00000395194 FGD5Q6ZNL6 1462 aa35■■■■□ 3.19
COL11A2-204ENST00000395194 CUX1P39880 1505 aa34.98■■■■□ 3.19
COL11A2-204ENST00000395194 FBLN2P98095 1184 aa34.97■■■■□ 3.19
COL11A2-204ENST00000395194 TDRD9Q8NDG6 1382 aaKnown RBP34.97■■■■□ 3.19
COL11A2-204ENST00000395194 SUPT5HO00267 1087 aaKnown RBP34.95■■■■□ 3.19
COL11A2-204ENST00000395194 SNAPC4Q5SXM2 1469 aa34.84■■■■□ 3.17
COL11A2-204ENST00000395194 WDR97A6NE52 1622 aa34.8■■■■□ 3.16
COL11A2-204ENST00000395194 CYB5RLQ6IPT4 315 aa34.75■■■■□ 3.15
COL11A2-204ENST00000395194 GRIN2BQ13224 1484 aa34.69■■■■□ 3.14
COL11A2-204ENST00000395194 ARAP1Q96P48 1450 aa34.69■■■■□ 3.14
COL11A2-204ENST00000395194 PBRM1Q86U86 1689 aa34.68■■■■□ 3.14
COL11A2-204ENST00000395194 MAGI1Q96QZ7 1491 aaPredicted RBP34.67■■■■□ 3.14
COL11A2-204ENST00000395194 CHMP7Q8WUX9 453 aaPredicted RBP34.65■■■■□ 3.14
COL11A2-204ENST00000395194 CLASP1Q7Z460 1538 aa34.61■■■■□ 3.13
COL11A2-204ENST00000395194 SYNJ1O43426 1573 aa34.6■■■■□ 3.13
COL11A2-204ENST00000395194 GAPVD1Q14C86 1478 aa34.59■■■■□ 3.13
COL11A2-204ENST00000395194 SYNJ2O15056 1496 aa34.57■■■■□ 3.12
COL11A2-204ENST00000395194 ABCA5Q8WWZ7 1642 aa34.55■■■■□ 3.12
COL11A2-204ENST00000395194 ABCA10Q8WWZ4 1543 aa34.55■■■■□ 3.12
COL11A2-204ENST00000395194 BIVM-ERCC5R4GMW8 1640 aa34.43■■■■□ 3.1
COL11A2-204ENST00000395194 TOP2BQ02880 1626 aa34.41■■■■□ 3.1
COL11A2-204ENST00000395194 WRNQ14191 1432 aaPredicted RBP eCLIP34.4■■■■□ 3.1
COL11A2-204ENST00000395194 TRHP20396 242 aaPredicted RBP34.38■■■■□ 3.09
COL11A2-204ENST00000395194 ADAMTS12P58397 1594 aa34.3■■■■□ 3.08
COL11A2-204ENST00000395194 GRIN2AQ12879 1464 aa34.27■■■■□ 3.08
COL11A2-204ENST00000395194 CEP170Q5SW79 1584 aa34.19■■■■□ 3.06
COL11A2-204ENST00000395194 ERCC6L2Q5T890 1561 aa34.15■■■■□ 3.06
COL11A2-204ENST00000395194 FHAD1B1AJZ9 1412 aa34.13■■■■□ 3.05
COL11A2-204ENST00000395194 NUP160Q12769 1436 aa34.12■■■■□ 3.05
COL11A2-204ENST00000395194 ERICH3Q5RHP9 1530 aa34.11■■■■□ 3.05
COL11A2-204ENST00000395194 SHROOM2Q13796 1616 aa34■■■■□ 3.03
COL11A2-204ENST00000395194 PRG4Q92954 1404 aaPredicted RBP33.82■■■■□ 3
COL11A2-204ENST00000395194 RUSC2Q8N2Y8 1516 aa33.82■■■■□ 3
COL11A2-204ENST00000395194 JPH4Q96JJ6 628 aa33.76■■■□□ 2.99
COL11A2-204ENST00000395194 KIF27Q86VH2 1401 aa33.7■■■□□ 2.98
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms