Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ABCA4P78363 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ABCA4P78363 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ABCA4P78363 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
ABCA4P78363 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ABCA4P78363 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
ABCA4P78363 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
ABCA4P78363 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC18.39■□□□□ 0.53
ABCA4P78363 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC18.39■□□□□ 0.53
ABCA4P78363 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
ABCA4P78363 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
ABCA4P78363 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
ABCA4P78363 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC18.39■□□□□ 0.53
ABCA4P78363 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
ABCA4P78363 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
ABCA4P78363 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
ABCA4P78363 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
ABCA4P78363 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ABCA4P78363 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ABCA4P78363 PPP1R14BP2-201ENST00000426284 444 ntBASIC18.38■□□□□ 0.53
ABCA4P78363 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
ABCA4P78363 MMAB-206ENST00000540016 945 ntTSL 3 BASIC18.38■□□□□ 0.53
ABCA4P78363 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ABCA4P78363 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
ABCA4P78363 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
ABCA4P78363 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
ABCA4P78363 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
ABCA4P78363 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
ABCA4P78363 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC18.38■□□□□ 0.53
ABCA4P78363 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ABCA4P78363 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ABCA4P78363 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ABCA4P78363 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC18.38■□□□□ 0.53
ABCA4P78363 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC18.37■□□□□ 0.53
ABCA4P78363 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
ABCA4P78363 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
ABCA4P78363 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
ABCA4P78363 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC18.37■□□□□ 0.53
ABCA4P78363 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC18.37■□□□□ 0.53
ABCA4P78363 AC016405.3-201ENST00000607710 860 ntBASIC18.37■□□□□ 0.53
ABCA4P78363 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
ABCA4P78363 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC18.37■□□□□ 0.53
ABCA4P78363 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC18.37■□□□□ 0.53
ABCA4P78363 COMT-203ENST00000403184 2217 ntTSL 2 BASIC18.37■□□□□ 0.53
ABCA4P78363 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ABCA4P78363 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC18.37■□□□□ 0.53
ABCA4P78363 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
ABCA4P78363 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC18.37■□□□□ 0.53
ABCA4P78363 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
ABCA4P78363 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ABCA4P78363 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ABCA4P78363 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
ABCA4P78363 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ABCA4P78363 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
ABCA4P78363 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ABCA4P78363 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
ABCA4P78363 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
ABCA4P78363 FXN-202ENST00000396364 980 ntTSL 5 BASIC18.36■□□□□ 0.53
ABCA4P78363 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC18.36■□□□□ 0.53
ABCA4P78363 APTR-203ENST00000430801 583 ntTSL 5 BASIC18.36■□□□□ 0.53
ABCA4P78363 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC18.36■□□□□ 0.53
ABCA4P78363 AC007322.4-201ENST00000509611 723 ntBASIC18.36■□□□□ 0.53
ABCA4P78363 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.36■□□□□ 0.53
ABCA4P78363 EEF1DP3-203ENST00000566025 782 ntBASIC18.36■□□□□ 0.53
ABCA4P78363 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ABCA4P78363 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
ABCA4P78363 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
ABCA4P78363 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ABCA4P78363 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
ABCA4P78363 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC18.35■□□□□ 0.53
ABCA4P78363 MARS-234ENST00000630571 216 ntTSL 5 BASIC18.35■□□□□ 0.53
ABCA4P78363 MARS-235ENST00000630803 183 ntTSL 3 BASIC18.35■□□□□ 0.53
ABCA4P78363 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ABCA4P78363 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC18.35■□□□□ 0.53
ABCA4P78363 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ABCA4P78363 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
ABCA4P78363 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ABCA4P78363 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ABCA4P78363 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
ABCA4P78363 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
ABCA4P78363 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ABCA4P78363 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC18.35■□□□□ 0.53
ABCA4P78363 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC18.35■□□□□ 0.53
ABCA4P78363 KRT18P29-201ENST00000397031 1267 ntBASIC18.35■□□□□ 0.53
ABCA4P78363 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ABCA4P78363 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ABCA4P78363 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC18.35■□□□□ 0.53
ABCA4P78363 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC18.35■□□□□ 0.53
ABCA4P78363 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC18.35■□□□□ 0.53
ABCA4P78363 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC18.35■□□□□ 0.53
ABCA4P78363 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ABCA4P78363 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ABCA4P78363 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ABCA4P78363 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
ABCA4P78363 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.34■□□□□ 0.53
ABCA4P78363 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC18.34■□□□□ 0.53
ABCA4P78363 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC18.34■□□□□ 0.53
ABCA4P78363 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ABCA4P78363 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
ABCA4P78363 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms