Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC18.77■□□□□ 0.6
MMP28Q9H239 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
MMP28Q9H239 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.59
MMP28Q9H239 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
MMP28Q9H239 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC18.76■□□□□ 0.59
MMP28Q9H239 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC18.76■□□□□ 0.59
MMP28Q9H239 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
MMP28Q9H239 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC18.76■□□□□ 0.59
MMP28Q9H239 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
MMP28Q9H239 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC18.76■□□□□ 0.59
MMP28Q9H239 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC18.76■□□□□ 0.59
MMP28Q9H239 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
MMP28Q9H239 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
MMP28Q9H239 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MMP28Q9H239 AC087289.5-201ENST00000586076 3175 ntBASIC18.76■□□□□ 0.59
MMP28Q9H239 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.76■□□□□ 0.59
MMP28Q9H239 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC18.76■□□□□ 0.59
MMP28Q9H239 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
MMP28Q9H239 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC18.75■□□□□ 0.59
MMP28Q9H239 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.75■□□□□ 0.59
MMP28Q9H239 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
MMP28Q9H239 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC18.75■□□□□ 0.59
MMP28Q9H239 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
MMP28Q9H239 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
MMP28Q9H239 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
MMP28Q9H239 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
MMP28Q9H239 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
MMP28Q9H239 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC18.75■□□□□ 0.59
MMP28Q9H239 GUSBP5-201ENST00000418136 578 ntBASIC18.75■□□□□ 0.59
MMP28Q9H239 BX664725.1-201ENST00000438252 379 ntBASIC18.75■□□□□ 0.59
MMP28Q9H239 RNF146-205ENST00000477776 762 ntTSL 3 BASIC18.75■□□□□ 0.59
MMP28Q9H239 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
MMP28Q9H239 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
MMP28Q9H239 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
MMP28Q9H239 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
MMP28Q9H239 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC18.75■□□□□ 0.59
MMP28Q9H239 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.75■□□□□ 0.59
MMP28Q9H239 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
MMP28Q9H239 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
MMP28Q9H239 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
MMP28Q9H239 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.75■□□□□ 0.59
MMP28Q9H239 AC131274.2-201ENST00000580697 1507 ntBASIC18.74■□□□□ 0.59
MMP28Q9H239 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
MMP28Q9H239 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
MMP28Q9H239 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
MMP28Q9H239 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
MMP28Q9H239 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
MMP28Q9H239 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
MMP28Q9H239 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
MMP28Q9H239 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
MMP28Q9H239 AL020996.1-203ENST00000536896 2307 ntBASIC18.74■□□□□ 0.59
MMP28Q9H239 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
MMP28Q9H239 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
MMP28Q9H239 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.74■□□□□ 0.59
MMP28Q9H239 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
MMP28Q9H239 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
MMP28Q9H239 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
MMP28Q9H239 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
MMP28Q9H239 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
MMP28Q9H239 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
MMP28Q9H239 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
MMP28Q9H239 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
MMP28Q9H239 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC18.73■□□□□ 0.59
MMP28Q9H239 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
MMP28Q9H239 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
MMP28Q9H239 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
MMP28Q9H239 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC18.73■□□□□ 0.59
MMP28Q9H239 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
MMP28Q9H239 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
MMP28Q9H239 ADM-207ENST00000530439 1839 ntTSL 2 BASIC18.73■□□□□ 0.59
MMP28Q9H239 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC18.73■□□□□ 0.59
MMP28Q9H239 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC18.73■□□□□ 0.59
MMP28Q9H239 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
MMP28Q9H239 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.73■□□□□ 0.59
MMP28Q9H239 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
MMP28Q9H239 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
MMP28Q9H239 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
MMP28Q9H239 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
MMP28Q9H239 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
MMP28Q9H239 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
MMP28Q9H239 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
MMP28Q9H239 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.73■□□□□ 0.59
MMP28Q9H239 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC18.72■□□□□ 0.59
MMP28Q9H239 ME2-206ENST00000638410 2289 ntTSL 5 BASIC18.72■□□□□ 0.59
MMP28Q9H239 ME2-210ENST00000639255 2262 ntTSL 5 BASIC18.72■□□□□ 0.59
MMP28Q9H239 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC18.72■□□□□ 0.59
MMP28Q9H239 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC18.72■□□□□ 0.59
MMP28Q9H239 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC18.72■□□□□ 0.59
MMP28Q9H239 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
MMP28Q9H239 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
MMP28Q9H239 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC18.72■□□□□ 0.59
MMP28Q9H239 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
MMP28Q9H239 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
MMP28Q9H239 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
MMP28Q9H239 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
MMP28Q9H239 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC18.72■□□□□ 0.59
MMP28Q9H239 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC18.72■□□□□ 0.59
MMP28Q9H239 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
MMP28Q9H239 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.72■□□□□ 0.59
MMP28Q9H239 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms