RNA–Protein interactions for RNA: ENST00000403162.7

CCDC47-202, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CCDC47, Length 2,195 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-202ENST00000403162 NISCHQ9Y2I1 1504 aa42.53■■■■■ 4.4
CCDC47-202ENST00000403162 CCDC180Q9P1Z9 1646 aa37.28■■■■□ 3.56
CCDC47-202ENST00000403162 ABCC9O60706 1549 aa35.71■■■■□ 3.31
CCDC47-202ENST00000403162 ZCCHC6Q5VYS8 1495 aaKnown RBP35.63■■■■□ 3.29
CCDC47-202ENST00000403162 DCAF8L2P0C7V8 631 aa35.37■■■■□ 3.25
CCDC47-202ENST00000403162 DCAF1Q9Y4B6 1507 aa35.14■■■■□ 3.22
CCDC47-202ENST00000403162 MYO15BQ96JP2 1530 aa34.89■■■■□ 3.18
CCDC47-202ENST00000403162 NACADO15069 1562 aa34.85■■■■□ 3.17
CCDC47-202ENST00000403162 RB1CC1Q8TDY2 1594 aa34.67■■■■□ 3.14
CCDC47-202ENST00000403162 SHROOM4Q9ULL8 1493 aa34.44■■■■□ 3.1
CCDC47-202ENST00000403162 SCRIBQ14160 1630 aa34.27■■■■□ 3.08
CCDC47-202ENST00000403162 UNC13AQ9UPW8 1703 aa33.91■■■■□ 3.02
CCDC47-202ENST00000403162 SUPT5HO00267 1087 aaKnown RBP33.83■■■■□ 3.01
CCDC47-202ENST00000403162 PABPN1Q86U42 306 aaKnown RBP eCLIP33.61■■■□□ 2.97
CCDC47-202ENST00000403162 BICRAQ9NZM4 1560 aa33.6■■■□□ 2.97
CCDC47-202ENST00000403162 CHIC1Q5VXU3 224 aa33.19■■■□□ 2.9
CCDC47-202ENST00000403162 CECR2Q9BXF3 1484 aa33.09■■■□□ 2.89
CCDC47-202ENST00000403162 BAZ1AQ9NRL2 1556 aaPredicted RBP32.88■■■□□ 2.85
CCDC47-202ENST00000403162 MROH2BQ7Z745 1585 aa32.85■■■□□ 2.85
CCDC47-202ENST00000403162 RSF1Q96T23 1441 aaPredicted RBP32.83■■■□□ 2.85
CCDC47-202ENST00000403162 SMARCA4P51532 1647 aa32.79■■■□□ 2.84
CCDC47-202ENST00000403162 HRCP23327 699 aa32.76■■■□□ 2.84
CCDC47-202ENST00000403162 EIF4G1Q04637 1599 aaKnown RBP32.64■■■□□ 2.82
CCDC47-202ENST00000403162 WIZO95785 1651 aa32.55■■■□□ 2.8
CCDC47-202ENST00000403162 PCGF6Q9BYE7 350 aa32.39■■■□□ 2.78
CCDC47-202ENST00000403162 PEG3Q9GZU2 1588 aa32.38■■■□□ 2.77
CCDC47-202ENST00000403162 ATAD2BQ9ULI0 1458 aa32.37■■■□□ 2.77
CCDC47-202ENST00000403162 SMARCA2P51531 1590 aa32.34■■■□□ 2.77
CCDC47-202ENST00000403162 CC2D2AQ9P2K1 1620 aa32.28■■■□□ 2.76
CCDC47-202ENST00000403162 TOP2AP11388 1531 aaKnown RBP32.21■■■□□ 2.75
CCDC47-202ENST00000403162 BAZ1BQ9UIG0 1483 aaKnown RBP32.18■■■□□ 2.74
CCDC47-202ENST00000403162 NCAPD3P42695 1498 aa32.16■■■□□ 2.74
CCDC47-202ENST00000403162 LOC105371045A0A1W2PR82 267 aa32.1■■■□□ 2.73
CCDC47-202ENST00000403162 HMGXB3Q12766 1538 aa32.07■■■□□ 2.72
CCDC47-202ENST00000403162 DNAJC5BQ9UF47 199 aa31.9■■■□□ 2.7
CCDC47-202ENST00000403162 CCDC88BA6NC98 1476 aa31.88■■■□□ 2.69
CCDC47-202ENST00000403162 PPARGC1BQ86YN6 1023 aaKnown RBP31.85■■■□□ 2.69
CCDC47-202ENST00000403162 TRIM26Q12899 539 aaPredicted RBP31.84■■■□□ 2.69
CCDC47-202ENST00000403162 TRIM41Q8WV44 630 aa31.57■■■□□ 2.64
CCDC47-202ENST00000403162 ZEB1P37275 1124 aaPredicted RBP31.36■■■□□ 2.61
CCDC47-202ENST00000403162 CADPSQ9ULU8 1353 aa31.33■■■□□ 2.61
CCDC47-202ENST00000403162 CFTRP13569 1480 aa31.32■■■□□ 2.6
CCDC47-202ENST00000403162 NESP48681 1621 aa31.2■■■□□ 2.58
CCDC47-202ENST00000403162 FAM9AQ8IZU1 332 aaPredicted RBP31.2■■■□□ 2.58
CCDC47-202ENST00000403162 LAMC3Q9Y6N6 1575 aa31.14■■■□□ 2.58
CCDC47-202ENST00000403162 PRDM2Q13029 1718 aa31.11■■■□□ 2.57
CCDC47-202ENST00000403162 ABCC8Q09428 1581 aa31.06■■■□□ 2.56
CCDC47-202ENST00000403162 FANCD2Q9BXW9 1451 aa30.99■■■□□ 2.55
CCDC47-202ENST00000403162 PDS5BQ9NTI5 1447 aa30.95■■■□□ 2.54
CCDC47-202ENST00000403162 WRNQ14191 1432 aaPredicted RBP eCLIP30.92■■■□□ 2.54
CCDC47-202ENST00000403162 CEP164Q9UPV0 1460 aa30.84■■■□□ 2.53
CCDC47-202ENST00000403162 EHMT2Q96KQ7 1210 aa30.81■■■□□ 2.52
CCDC47-202ENST00000403162 SYNJ1O43426 1573 aa30.8■■■□□ 2.52
CCDC47-202ENST00000403162 KIF21AQ7Z4S6 1674 aa30.8■■■□□ 2.52
CCDC47-202ENST00000403162 CUX1P39880 1505 aa30.75■■■□□ 2.51
CCDC47-202ENST00000403162 TOP2BQ02880 1626 aa30.71■■■□□ 2.51
CCDC47-202ENST00000403162 ERCC6Q03468 1493 aa30.69■■■□□ 2.5
CCDC47-202ENST00000403162 BIVM-ERCC5R4GMW8 1640 aa30.67■■■□□ 2.5
CCDC47-202ENST00000403162 URB2Q14146 1524 aaKnown RBP30.61■■■□□ 2.49
CCDC47-202ENST00000403162 DNMBPQ6XZF7 1577 aa30.61■■■□□ 2.49
CCDC47-202ENST00000403162 TOPBP1Q92547 1522 aa30.59■■■□□ 2.49
CCDC47-202ENST00000403162 MRC2Q9UBG0 1479 aa30.57■■■□□ 2.48
CCDC47-202ENST00000403162 FGD5Q6ZNL6 1462 aa30.49■■■□□ 2.47
CCDC47-202ENST00000403162 THOC2Q8NI27 1593 aaKnown RBP30.4■■■□□ 2.46
CCDC47-202ENST00000403162 POLA1P09884 1462 aaPredicted RBP30.4■■■□□ 2.46
CCDC47-202ENST00000403162 WDR62O43379 1518 aa30.4■■■□□ 2.46
CCDC47-202ENST00000403162 SOGA1O94964 1423 aa30.39■■■□□ 2.46
CCDC47-202ENST00000403162 EEA1Q15075 1411 aa30.37■■■□□ 2.45
CCDC47-202ENST00000403162 CEP162Q5TB80 1403 aa30.37■■■□□ 2.45
CCDC47-202ENST00000403162 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.37■■■□□ 2.45
CCDC47-202ENST00000403162 CCER1Q8TC90 406 aaPredicted RBP30.35■■■□□ 2.45
CCDC47-202ENST00000403162 TNIKQ9UKE5 1360 aa30.35■■■□□ 2.45
CCDC47-202ENST00000403162 SCAF1Q9H7N4 1312 aaKnown RBP30.32■■■□□ 2.44
CCDC47-202ENST00000403162 RAD54L2Q9Y4B4 1467 aa30.32■■■□□ 2.44
CCDC47-202ENST00000403162 RUSC2Q8N2Y8 1516 aa30.3■■■□□ 2.44
CCDC47-202ENST00000403162 PELP1Q8IZL8 1130 aaKnown RBP30.25■■■□□ 2.43
CCDC47-202ENST00000403162 CUX2O14529 1486 aa30.23■■■□□ 2.43
CCDC47-202ENST00000403162 ABCA10Q8WWZ4 1543 aa30.2■■■□□ 2.42
CCDC47-202ENST00000403162 KIF27Q86VH2 1401 aa30.19■■■□□ 2.42
CCDC47-202ENST00000403162 CSRNP3Q8WYN3 585 aa30.17■■■□□ 2.42
CCDC47-202ENST00000403162 TARBP1Q13395 1621 aaKnown RBP30.14■■■□□ 2.42
CCDC47-202ENST00000403162 GOLGA3Q08378 1498 aa30.12■■■□□ 2.41
CCDC47-202ENST00000403162 IFT140Q96RY7 1462 aa30.12■■■□□ 2.41
CCDC47-202ENST00000403162 WDR97A6NE52 1622 aa30.11■■■□□ 2.41
CCDC47-202ENST00000403162 TDRD9Q8NDG6 1382 aaKnown RBP30.08■■■□□ 2.41
CCDC47-202ENST00000403162 UBTFP17480 764 aaKnown RBP30■■■□□ 2.39
CCDC47-202ENST00000403162 ACIN1Q9UKV3 1341 aaKnown RBP29.99■■■□□ 2.39
CCDC47-202ENST00000403162 ABCA5Q8WWZ7 1642 aa29.98■■■□□ 2.39
CCDC47-202ENST00000403162 ZNF608Q9ULD9 1512 aaPredicted RBP29.98■■■□□ 2.39
CCDC47-202ENST00000403162 DIEXFQ68CQ4 756 aaKnown RBP29.97■■■□□ 2.39
CCDC47-202ENST00000403162 GAPVD1Q14C86 1478 aa29.97■■■□□ 2.39
CCDC47-202ENST00000403162 IGF1RP08069 1367 aa29.96■■■□□ 2.39
CCDC47-202ENST00000403162 KIF21BO75037 1637 aa29.96■■■□□ 2.39
CCDC47-202ENST00000403162 AQRO60306 1485 aaKnown RBP eCLIP29.95■■■□□ 2.391e-7■■■■□ 23.2
CCDC47-202ENST00000403162 TTBK1Q5TCY1 1321 aaPredicted RBP29.95■■■□□ 2.38
CCDC47-202ENST00000403162 EIF4G3O43432 1585 aaKnown RBP29.85■■■□□ 2.37
CCDC47-202ENST00000403162 NEUROD1Q13562 356 aa29.85■■■□□ 2.37
CCDC47-202ENST00000403162 PRXQ9BXM0 1461 aa29.85■■■□□ 2.37
CCDC47-202ENST00000403162 ERICH3Q5RHP9 1530 aa29.84■■■□□ 2.37
CCDC47-202ENST00000403162 CARMIL1Q5VZK9 1371 aa29.82■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms