Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
LSM1O15116 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
LSM1O15116 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.62■□□□□ 0.89
LSM1O15116 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
LSM1O15116 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.62■□□□□ 0.89
LSM1O15116 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
LSM1O15116 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LSM1O15116 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
LSM1O15116 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.62■□□□□ 0.89
LSM1O15116 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
LSM1O15116 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.61■□□□□ 0.89
LSM1O15116 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
LSM1O15116 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
LSM1O15116 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LSM1O15116 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC20.61■□□□□ 0.89
LSM1O15116 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
LSM1O15116 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.61■□□□□ 0.89
LSM1O15116 AL356441.2-201ENST00000443009 864 ntBASIC20.61■□□□□ 0.89
LSM1O15116 OXCT2P1-201ENST00000447263 1535 ntBASIC20.61■□□□□ 0.89
LSM1O15116 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LSM1O15116 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
LSM1O15116 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
LSM1O15116 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
LSM1O15116 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LSM1O15116 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.61■□□□□ 0.89
LSM1O15116 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LSM1O15116 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
LSM1O15116 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LSM1O15116 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.6■□□□□ 0.89
LSM1O15116 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.6■□□□□ 0.89
LSM1O15116 FEM1AP4-201ENST00000443167 1987 ntBASIC20.6■□□□□ 0.89
LSM1O15116 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.6■□□□□ 0.89
LSM1O15116 SERBP1P1-201ENST00000396021 1160 ntBASIC20.6■□□□□ 0.89
LSM1O15116 RPP21-222ENST00000433076 577 ntTSL 2 BASIC20.6■□□□□ 0.89
LSM1O15116 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC20.6■□□□□ 0.89
LSM1O15116 MIR4466-201ENST00000606121 54 ntBASIC20.6■□□□□ 0.89
LSM1O15116 AL138724.1-201ENST00000606771 1088 ntBASIC20.6■□□□□ 0.89
LSM1O15116 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
LSM1O15116 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
LSM1O15116 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LSM1O15116 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LSM1O15116 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.59■□□□□ 0.89
LSM1O15116 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LSM1O15116 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
LSM1O15116 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.59■□□□□ 0.89
LSM1O15116 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
LSM1O15116 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.59■□□□□ 0.89
LSM1O15116 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC20.59■□□□□ 0.89
LSM1O15116 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC20.59■□□□□ 0.89
LSM1O15116 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LSM1O15116 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LSM1O15116 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LSM1O15116 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.59■□□□□ 0.89
LSM1O15116 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LSM1O15116 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
LSM1O15116 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LSM1O15116 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.58■□□□□ 0.89
LSM1O15116 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.58■□□□□ 0.89
LSM1O15116 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
LSM1O15116 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
LSM1O15116 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.58■□□□□ 0.89
LSM1O15116 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
LSM1O15116 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
LSM1O15116 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC20.58■□□□□ 0.89
LSM1O15116 AC104564.3-201ENST00000582367 638 ntBASIC20.58■□□□□ 0.89
LSM1O15116 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.58■□□□□ 0.89
LSM1O15116 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
LSM1O15116 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
LSM1O15116 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.88
LSM1O15116 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LSM1O15116 AF106564.1-201ENST00000607058 2553 ntBASIC20.58■□□□□ 0.88
LSM1O15116 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.58■□□□□ 0.88
LSM1O15116 SYT6-210ENST00000641643 1587 ntBASIC20.58■□□□□ 0.88
LSM1O15116 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
LSM1O15116 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
LSM1O15116 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LSM1O15116 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
LSM1O15116 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
LSM1O15116 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.58■□□□□ 0.88
LSM1O15116 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LSM1O15116 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LSM1O15116 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LSM1O15116 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.57■□□□□ 0.88
LSM1O15116 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.57■□□□□ 0.88
LSM1O15116 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
LSM1O15116 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC20.57■□□□□ 0.88
LSM1O15116 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC20.57■□□□□ 0.88
LSM1O15116 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.57■□□□□ 0.88
LSM1O15116 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LSM1O15116 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.57■□□□□ 0.88
LSM1O15116 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LSM1O15116 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LSM1O15116 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LSM1O15116 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LSM1O15116 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LSM1O15116 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.56■□□□□ 0.88
LSM1O15116 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LSM1O15116 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LSM1O15116 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LSM1O15116 DUX4L19-201ENST00000557448 1267 ntBASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms