Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
LRRC53A6NM62 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC23.15■■□□□ 1.3
LRRC53A6NM62 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
LRRC53A6NM62 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
LRRC53A6NM62 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
LRRC53A6NM62 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.3
LRRC53A6NM62 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
LRRC53A6NM62 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
LRRC53A6NM62 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
LRRC53A6NM62 SERBP1P1-201ENST00000396021 1160 ntBASIC23.14■■□□□ 1.29
LRRC53A6NM62 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC23.14■■□□□ 1.29
LRRC53A6NM62 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC23.14■■□□□ 1.29
LRRC53A6NM62 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC23.14■■□□□ 1.29
LRRC53A6NM62 MIR4466-201ENST00000606121 54 ntBASIC23.14■■□□□ 1.29
LRRC53A6NM62 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
LRRC53A6NM62 AC087239.1-201ENST00000622671 572 ntBASIC23.14■■□□□ 1.29
LRRC53A6NM62 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC23.14■■□□□ 1.29
LRRC53A6NM62 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.29
LRRC53A6NM62 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.29
LRRC53A6NM62 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC23.13■■□□□ 1.29
LRRC53A6NM62 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
LRRC53A6NM62 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC23.13■■□□□ 1.29
LRRC53A6NM62 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
LRRC53A6NM62 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
LRRC53A6NM62 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
LRRC53A6NM62 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
LRRC53A6NM62 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC23.13■■□□□ 1.29
LRRC53A6NM62 HES6-206ENST00000409574 738 ntTSL 2 BASIC23.13■■□□□ 1.29
LRRC53A6NM62 RPP21-222ENST00000433076 577 ntTSL 2 BASIC23.13■■□□□ 1.29
LRRC53A6NM62 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC23.13■■□□□ 1.29
LRRC53A6NM62 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
LRRC53A6NM62 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC23.13■■□□□ 1.29
LRRC53A6NM62 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC23.13■■□□□ 1.29
LRRC53A6NM62 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
LRRC53A6NM62 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
LRRC53A6NM62 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC23.13■■□□□ 1.29
LRRC53A6NM62 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
LRRC53A6NM62 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
LRRC53A6NM62 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC23.12■■□□□ 1.29
LRRC53A6NM62 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC23.12■■□□□ 1.29
LRRC53A6NM62 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
LRRC53A6NM62 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC23.12■■□□□ 1.29
LRRC53A6NM62 TRIR-202ENST00000588213 841 ntTSL 3 BASIC23.12■■□□□ 1.29
LRRC53A6NM62 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
LRRC53A6NM62 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC23.12■■□□□ 1.29
LRRC53A6NM62 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
LRRC53A6NM62 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC23.12■■□□□ 1.29
LRRC53A6NM62 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC23.12■■□□□ 1.29
LRRC53A6NM62 OXCT2P1-201ENST00000447263 1535 ntBASIC23.12■■□□□ 1.29
LRRC53A6NM62 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC23.12■■□□□ 1.29
LRRC53A6NM62 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
LRRC53A6NM62 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC23.11■■□□□ 1.29
LRRC53A6NM62 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
LRRC53A6NM62 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
LRRC53A6NM62 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC23.11■■□□□ 1.29
LRRC53A6NM62 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
LRRC53A6NM62 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC23.11■■□□□ 1.29
LRRC53A6NM62 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
LRRC53A6NM62 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
LRRC53A6NM62 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
LRRC53A6NM62 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
LRRC53A6NM62 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC23.11■■□□□ 1.29
LRRC53A6NM62 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC23.11■■□□□ 1.29
LRRC53A6NM62 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC23.11■■□□□ 1.29
LRRC53A6NM62 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC23.11■■□□□ 1.29
LRRC53A6NM62 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC23.11■■□□□ 1.29
LRRC53A6NM62 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
LRRC53A6NM62 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
LRRC53A6NM62 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
LRRC53A6NM62 SYT6-210ENST00000641643 1587 ntBASIC23.1■■□□□ 1.29
LRRC53A6NM62 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
LRRC53A6NM62 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
LRRC53A6NM62 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC23.1■■□□□ 1.29
LRRC53A6NM62 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
LRRC53A6NM62 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
LRRC53A6NM62 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC23.1■■□□□ 1.29
LRRC53A6NM62 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC23.1■■□□□ 1.29
LRRC53A6NM62 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
LRRC53A6NM62 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
LRRC53A6NM62 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC23.1■■□□□ 1.29
LRRC53A6NM62 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
LRRC53A6NM62 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
LRRC53A6NM62 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC23.1■■□□□ 1.29
LRRC53A6NM62 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
LRRC53A6NM62 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC23.09■■□□□ 1.29
LRRC53A6NM62 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
LRRC53A6NM62 MFF-203ENST00000349901 1716 ntTSL 2 BASIC23.09■■□□□ 1.29
LRRC53A6NM62 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC23.09■■□□□ 1.29
LRRC53A6NM62 AC104564.3-201ENST00000582367 638 ntBASIC23.09■■□□□ 1.29
LRRC53A6NM62 AL138724.1-201ENST00000606771 1088 ntBASIC23.09■■□□□ 1.29
LRRC53A6NM62 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC23.09■■□□□ 1.29
LRRC53A6NM62 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC23.09■■□□□ 1.29
LRRC53A6NM62 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
LRRC53A6NM62 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
LRRC53A6NM62 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC23.09■■□□□ 1.29
LRRC53A6NM62 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC23.09■■□□□ 1.29
LRRC53A6NM62 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC23.08■■□□□ 1.29
LRRC53A6NM62 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
LRRC53A6NM62 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
LRRC53A6NM62 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 144.3 ms