Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC33.14■■■□□ 2.9
COL17A1Q9UMD9 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC33.14■■■□□ 2.9
COL17A1Q9UMD9 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC33.14■■■□□ 2.9
COL17A1Q9UMD9 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC33.14■■■□□ 2.9
COL17A1Q9UMD9 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC33.13■■■□□ 2.89
COL17A1Q9UMD9 REXO1L12P-201ENST00000622156 912 ntBASIC33.13■■■□□ 2.89
COL17A1Q9UMD9 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC33.13■■■□□ 2.89
COL17A1Q9UMD9 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC33.13■■■□□ 2.89
COL17A1Q9UMD9 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC33.13■■■□□ 2.89
COL17A1Q9UMD9 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC33.13■■■□□ 2.89
COL17A1Q9UMD9 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC33.12■■■□□ 2.89
COL17A1Q9UMD9 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC33.12■■■□□ 2.89
COL17A1Q9UMD9 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC33.12■■■□□ 2.89
COL17A1Q9UMD9 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC33.12■■■□□ 2.89
COL17A1Q9UMD9 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC33.12■■■□□ 2.89
COL17A1Q9UMD9 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC33.12■■■□□ 2.89
COL17A1Q9UMD9 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC33.12■■■□□ 2.89
COL17A1Q9UMD9 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC33.12■■■□□ 2.89
COL17A1Q9UMD9 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC33.12■■■□□ 2.89
COL17A1Q9UMD9 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC33.12■■■□□ 2.89
COL17A1Q9UMD9 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC33.12■■■□□ 2.89
COL17A1Q9UMD9 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC33.12■■■□□ 2.89
COL17A1Q9UMD9 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC33.12■■■□□ 2.89
COL17A1Q9UMD9 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC33.12■■■□□ 2.89
COL17A1Q9UMD9 EI24-213ENST00000618552 1747 ntTSL 5 BASIC33.11■■■□□ 2.89
COL17A1Q9UMD9 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC33.11■■■□□ 2.89
COL17A1Q9UMD9 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC33.11■■■□□ 2.89
COL17A1Q9UMD9 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC33.11■■■□□ 2.89
COL17A1Q9UMD9 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC33.11■■■□□ 2.89
COL17A1Q9UMD9 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC33.11■■■□□ 2.89
COL17A1Q9UMD9 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC33.11■■■□□ 2.89
COL17A1Q9UMD9 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC33.11■■■□□ 2.89
COL17A1Q9UMD9 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC33.11■■■□□ 2.89
COL17A1Q9UMD9 AC055733.4-201ENST00000638462 1354 ntBASIC33.1■■■□□ 2.89
COL17A1Q9UMD9 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC33.1■■■□□ 2.89
COL17A1Q9UMD9 CREM-210ENST00000374721 2020 ntTSL 5 BASIC33.1■■■□□ 2.89
COL17A1Q9UMD9 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC33.1■■■□□ 2.89
COL17A1Q9UMD9 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC33.1■■■□□ 2.89
COL17A1Q9UMD9 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC33.1■■■□□ 2.89
COL17A1Q9UMD9 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC33.1■■■□□ 2.89
COL17A1Q9UMD9 AC008403.3-201ENST00000598924 454 ntBASIC33.1■■■□□ 2.89
COL17A1Q9UMD9 Z99916.2-201ENST00000604037 246 ntBASIC33.1■■■□□ 2.89
COL17A1Q9UMD9 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC33.09■■■□□ 2.89
COL17A1Q9UMD9 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC33.09■■■□□ 2.89
COL17A1Q9UMD9 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC33.09■■■□□ 2.89
COL17A1Q9UMD9 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC33.09■■■□□ 2.89
COL17A1Q9UMD9 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC33.09■■■□□ 2.89
COL17A1Q9UMD9 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC33.08■■■□□ 2.89
COL17A1Q9UMD9 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC33.08■■■□□ 2.89
COL17A1Q9UMD9 SNORA78-201ENST00000459373 127 ntBASIC33.08■■■□□ 2.89
COL17A1Q9UMD9 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC33.08■■■□□ 2.89
COL17A1Q9UMD9 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC33.08■■■□□ 2.89
COL17A1Q9UMD9 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC33.08■■■□□ 2.89
COL17A1Q9UMD9 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC33.08■■■□□ 2.89
COL17A1Q9UMD9 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC33.08■■■□□ 2.89
COL17A1Q9UMD9 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC33.07■■■□□ 2.89
COL17A1Q9UMD9 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC33.07■■■□□ 2.88
COL17A1Q9UMD9 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC33.07■■■□□ 2.88
COL17A1Q9UMD9 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC33.07■■■□□ 2.88
COL17A1Q9UMD9 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC33.07■■■□□ 2.88
COL17A1Q9UMD9 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC33.07■■■□□ 2.88
COL17A1Q9UMD9 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC33.07■■■□□ 2.88
COL17A1Q9UMD9 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC33.07■■■□□ 2.88
COL17A1Q9UMD9 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC33.07■■■□□ 2.88
COL17A1Q9UMD9 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC33.07■■■□□ 2.88
COL17A1Q9UMD9 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC33.07■■■□□ 2.88
COL17A1Q9UMD9 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC33.06■■■□□ 2.88
COL17A1Q9UMD9 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC33.06■■■□□ 2.88
COL17A1Q9UMD9 MIR718-201ENST00000390190 70 ntBASIC33.06■■■□□ 2.88
COL17A1Q9UMD9 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC33.06■■■□□ 2.88
COL17A1Q9UMD9 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC33.06■■■□□ 2.88
COL17A1Q9UMD9 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC33.06■■■□□ 2.88
COL17A1Q9UMD9 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC33.06■■■□□ 2.88
COL17A1Q9UMD9 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC33.05■■■□□ 2.88
COL17A1Q9UMD9 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC33.05■■■□□ 2.88
COL17A1Q9UMD9 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC33.05■■■□□ 2.88
COL17A1Q9UMD9 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC33.05■■■□□ 2.88
COL17A1Q9UMD9 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC33.05■■■□□ 2.88
COL17A1Q9UMD9 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC33.05■■■□□ 2.88
COL17A1Q9UMD9 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC33.05■■■□□ 2.88
COL17A1Q9UMD9 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC33.05■■■□□ 2.88
COL17A1Q9UMD9 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC33.05■■■□□ 2.88
COL17A1Q9UMD9 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC33.05■■■□□ 2.88
COL17A1Q9UMD9 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC33.05■■■□□ 2.88
COL17A1Q9UMD9 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC33.05■■■□□ 2.88
COL17A1Q9UMD9 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC33.05■■■□□ 2.88
COL17A1Q9UMD9 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
COL17A1Q9UMD9 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC33.04■■■□□ 2.88
COL17A1Q9UMD9 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC33.04■■■□□ 2.88
COL17A1Q9UMD9 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC33.04■■■□□ 2.88
COL17A1Q9UMD9 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC33.04■■■□□ 2.88
COL17A1Q9UMD9 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
COL17A1Q9UMD9 RNF121-214ENST00000533380 870 ntTSL 3 BASIC33.04■■■□□ 2.88
COL17A1Q9UMD9 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC33.04■■■□□ 2.88
COL17A1Q9UMD9 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC33.03■■■□□ 2.88
COL17A1Q9UMD9 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC33.03■■■□□ 2.88
COL17A1Q9UMD9 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC33.03■■■□□ 2.88
COL17A1Q9UMD9 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC33.03■■■□□ 2.88
COL17A1Q9UMD9 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC33.03■■■□□ 2.88
COL17A1Q9UMD9 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC33.03■■■□□ 2.88
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms