Protein–RNA interactions for Protein: S4R434

TMEM56-RWDD3, TMEM56-RWDD3 readthrough, humanhuman

Predictions only

Length 201 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM56-RWDD3S4R434 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TMEM56-RWDD3S4R434 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TMEM56-RWDD3S4R434 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
TMEM56-RWDD3S4R434 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TMEM56-RWDD3S4R434 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC17.66■□□□□ 0.42
TMEM56-RWDD3S4R434 CLTA-210ENST00000540080 989 ntTSL 2 BASIC17.66■□□□□ 0.42
TMEM56-RWDD3S4R434 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC17.66■□□□□ 0.42
TMEM56-RWDD3S4R434 LINC01521-201ENST00000504184 1943 ntBASIC17.66■□□□□ 0.42
TMEM56-RWDD3S4R434 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC17.66■□□□□ 0.42
TMEM56-RWDD3S4R434 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TMEM56-RWDD3S4R434 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TMEM56-RWDD3S4R434 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TMEM56-RWDD3S4R434 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TMEM56-RWDD3S4R434 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
TMEM56-RWDD3S4R434 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TMEM56-RWDD3S4R434 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TMEM56-RWDD3S4R434 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TMEM56-RWDD3S4R434 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TMEM56-RWDD3S4R434 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TMEM56-RWDD3S4R434 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TMEM56-RWDD3S4R434 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TMEM56-RWDD3S4R434 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC17.65■□□□□ 0.42
TMEM56-RWDD3S4R434 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC17.65■□□□□ 0.42
TMEM56-RWDD3S4R434 NKILA-201ENST00000613231 537 ntTSL 4 BASIC17.65■□□□□ 0.42
TMEM56-RWDD3S4R434 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
TMEM56-RWDD3S4R434 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC17.65■□□□□ 0.42
TMEM56-RWDD3S4R434 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC17.65■□□□□ 0.42
TMEM56-RWDD3S4R434 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
TMEM56-RWDD3S4R434 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC17.65■□□□□ 0.42
TMEM56-RWDD3S4R434 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TMEM56-RWDD3S4R434 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
TMEM56-RWDD3S4R434 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TMEM56-RWDD3S4R434 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
TMEM56-RWDD3S4R434 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TMEM56-RWDD3S4R434 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
TMEM56-RWDD3S4R434 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
TMEM56-RWDD3S4R434 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TMEM56-RWDD3S4R434 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TMEM56-RWDD3S4R434 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC17.64■□□□□ 0.41
TMEM56-RWDD3S4R434 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
TMEM56-RWDD3S4R434 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
TMEM56-RWDD3S4R434 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC17.64■□□□□ 0.41
TMEM56-RWDD3S4R434 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC17.64■□□□□ 0.41
TMEM56-RWDD3S4R434 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
TMEM56-RWDD3S4R434 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC17.64■□□□□ 0.41
TMEM56-RWDD3S4R434 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TMEM56-RWDD3S4R434 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC17.64■□□□□ 0.41
TMEM56-RWDD3S4R434 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TMEM56-RWDD3S4R434 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC17.64■□□□□ 0.41
TMEM56-RWDD3S4R434 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TMEM56-RWDD3S4R434 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TMEM56-RWDD3S4R434 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TMEM56-RWDD3S4R434 TSPY13P-201ENST00000338964 914 ntBASIC17.63■□□□□ 0.41
TMEM56-RWDD3S4R434 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TMEM56-RWDD3S4R434 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC17.63■□□□□ 0.41
TMEM56-RWDD3S4R434 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC17.63■□□□□ 0.41
TMEM56-RWDD3S4R434 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC17.63■□□□□ 0.41
TMEM56-RWDD3S4R434 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
TMEM56-RWDD3S4R434 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
TMEM56-RWDD3S4R434 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TMEM56-RWDD3S4R434 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
TMEM56-RWDD3S4R434 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TMEM56-RWDD3S4R434 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TMEM56-RWDD3S4R434 AC009102.2-201ENST00000606772 1639 ntBASIC17.62■□□□□ 0.41
TMEM56-RWDD3S4R434 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
TMEM56-RWDD3S4R434 CLTA-206ENST00000466396 695 ntTSL 2 BASIC17.62■□□□□ 0.41
TMEM56-RWDD3S4R434 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC17.62■□□□□ 0.41
TMEM56-RWDD3S4R434 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
TMEM56-RWDD3S4R434 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC17.61■□□□□ 0.41
TMEM56-RWDD3S4R434 AC103834.1-201ENST00000520383 144 ntBASIC17.61■□□□□ 0.41
TMEM56-RWDD3S4R434 TK2-216ENST00000564917 1156 ntTSL 3 BASIC17.61■□□□□ 0.41
TMEM56-RWDD3S4R434 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TMEM56-RWDD3S4R434 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TMEM56-RWDD3S4R434 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TMEM56-RWDD3S4R434 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TMEM56-RWDD3S4R434 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TMEM56-RWDD3S4R434 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC17.61■□□□□ 0.41
TMEM56-RWDD3S4R434 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TMEM56-RWDD3S4R434 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TMEM56-RWDD3S4R434 AL157384.1-201ENST00000445995 2473 ntBASIC17.6■□□□□ 0.41
TMEM56-RWDD3S4R434 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TMEM56-RWDD3S4R434 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TMEM56-RWDD3S4R434 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TMEM56-RWDD3S4R434 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC17.6■□□□□ 0.41
TMEM56-RWDD3S4R434 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
TMEM56-RWDD3S4R434 AC103724.3-201ENST00000564481 992 ntBASIC17.6■□□□□ 0.41
TMEM56-RWDD3S4R434 AC104564.3-201ENST00000582367 638 ntBASIC17.6■□□□□ 0.41
TMEM56-RWDD3S4R434 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC17.6■□□□□ 0.41
TMEM56-RWDD3S4R434 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC17.6■□□□□ 0.41
TMEM56-RWDD3S4R434 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TMEM56-RWDD3S4R434 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC17.6■□□□□ 0.41
TMEM56-RWDD3S4R434 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TMEM56-RWDD3S4R434 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
TMEM56-RWDD3S4R434 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
TMEM56-RWDD3S4R434 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
TMEM56-RWDD3S4R434 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC17.6■□□□□ 0.41
TMEM56-RWDD3S4R434 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TMEM56-RWDD3S4R434 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
TMEM56-RWDD3S4R434 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TMEM56-RWDD3S4R434 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms