Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SDC1P18827 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SDC1P18827 AL137060.1-201ENST00000618151 2648 ntBASIC20.68■□□□□ 0.9
SDC1P18827 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.68■□□□□ 0.9
SDC1P18827 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SDC1P18827 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SDC1P18827 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SDC1P18827 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.67■□□□□ 0.9
SDC1P18827 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.67■□□□□ 0.9
SDC1P18827 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SDC1P18827 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SDC1P18827 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.67■□□□□ 0.9
SDC1P18827 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
SDC1P18827 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SDC1P18827 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SDC1P18827 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SDC1P18827 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SDC1P18827 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
SDC1P18827 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.66■□□□□ 0.9
SDC1P18827 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.66■□□□□ 0.9
SDC1P18827 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SDC1P18827 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SDC1P18827 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SDC1P18827 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SDC1P18827 OR2I1P-207ENST00000453522 948 ntBASIC20.66■□□□□ 0.9
SDC1P18827 AC079089.2-201ENST00000531211 1277 ntBASIC20.66■□□□□ 0.9
SDC1P18827 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SDC1P18827 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC20.66■□□□□ 0.9
SDC1P18827 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
SDC1P18827 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SDC1P18827 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.66■□□□□ 0.9
SDC1P18827 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.66■□□□□ 0.9
SDC1P18827 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SDC1P18827 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SDC1P18827 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
SDC1P18827 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
SDC1P18827 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.66■□□□□ 0.9
SDC1P18827 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SDC1P18827 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SDC1P18827 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
SDC1P18827 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.65■□□□□ 0.9
SDC1P18827 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SDC1P18827 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SDC1P18827 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SDC1P18827 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
SDC1P18827 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SDC1P18827 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SDC1P18827 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC20.65■□□□□ 0.9
SDC1P18827 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
SDC1P18827 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.65■□□□□ 0.9
SDC1P18827 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.65■□□□□ 0.9
SDC1P18827 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
SDC1P18827 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SDC1P18827 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SDC1P18827 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.65■□□□□ 0.9
SDC1P18827 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.64■□□□□ 0.9
SDC1P18827 AC026310.3-201ENST00000625186 2373 ntBASIC20.64■□□□□ 0.89
SDC1P18827 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
SDC1P18827 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SDC1P18827 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC20.64■□□□□ 0.89
SDC1P18827 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC20.64■□□□□ 0.89
SDC1P18827 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SDC1P18827 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.64■□□□□ 0.89
SDC1P18827 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20.64■□□□□ 0.89
SDC1P18827 AC092171.4-201ENST00000609130 632 ntBASIC20.64■□□□□ 0.89
SDC1P18827 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
SDC1P18827 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.64■□□□□ 0.89
SDC1P18827 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SDC1P18827 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SDC1P18827 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SDC1P18827 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
SDC1P18827 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SDC1P18827 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SDC1P18827 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.63■□□□□ 0.89
SDC1P18827 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.63■□□□□ 0.89
SDC1P18827 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC20.63■□□□□ 0.89
SDC1P18827 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SDC1P18827 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.63■□□□□ 0.89
SDC1P18827 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SDC1P18827 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SDC1P18827 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.63■□□□□ 0.89
SDC1P18827 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.62■□□□□ 0.89
SDC1P18827 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.62■□□□□ 0.89
SDC1P18827 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SDC1P18827 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
SDC1P18827 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.62■□□□□ 0.89
SDC1P18827 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.62■□□□□ 0.89
SDC1P18827 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SDC1P18827 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SDC1P18827 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
SDC1P18827 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SDC1P18827 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SDC1P18827 RPP21-222ENST00000433076 577 ntTSL 2 BASIC20.62■□□□□ 0.89
SDC1P18827 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.62■□□□□ 0.89
SDC1P18827 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC20.62■□□□□ 0.89
SDC1P18827 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
SDC1P18827 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SDC1P18827 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SDC1P18827 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SDC1P18827 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms