Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC29.17■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC29.17■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 AC004911.1-201ENST00000416316 871 ntBASIC29.16■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC29.16■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC29.16■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC29.16■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC29.15■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC29.15■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 AC079834.2-201ENST00000609776 1949 ntBASIC29.15■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC29.15■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC29.15■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC29.15■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 AC139530.1-201ENST00000575312 1977 ntBASIC29.15■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC29.15■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC29.14■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC29.14■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC29.14■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC29.14■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC29.14■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 GRAMD4P4-201ENST00000613563 1115 ntBASIC29.14■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC29.14■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC29.14■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC29.13■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC29.13■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC29.13■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC29.13■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 DLX3-202ENST00000512495 834 ntTSL 2 BASIC29.13■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 AL499627.2-201ENST00000606283 725 ntBASIC29.13■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC29.13■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC29.13■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC29.13■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC29.13■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC29.12■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC29.12■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC29.12■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC29.12■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC29.12■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC29.12■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC29.12■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC29.12■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC29.12■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC29.12■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC29.12■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC29.12■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 LINC00526-201ENST00000581067 1875 ntBASIC29.12■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 WWC2-AS2-201ENST00000578387 2183 ntBASIC29.12■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC29.12■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC29.11■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC29.11■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC29.11■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC29.11■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC29.11■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC29.11■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC29.11■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC29.11■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC29.11■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC29.11■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC29.1■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC29.1■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC29.1■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC29.1■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC29.1■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC29.1■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC29.09■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC29.09■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 MIR939-201ENST00000401314 82 ntBASIC29.09■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC29.09■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC29.09■■■□□ 2.25
SENP3-EIF4A1A0A087X0R7 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms