Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 DUSP8P3-201ENST00000399571 1760 ntBASIC17.75■□□□□ 0.43
TRAV40A0A0B4J280 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC17.75■□□□□ 0.43
TRAV40A0A0B4J280 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
TRAV40A0A0B4J280 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC17.74■□□□□ 0.43
TRAV40A0A0B4J280 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC17.74■□□□□ 0.43
TRAV40A0A0B4J280 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC17.74■□□□□ 0.43
TRAV40A0A0B4J280 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV40A0A0B4J280 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC17.74■□□□□ 0.43
TRAV40A0A0B4J280 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV40A0A0B4J280 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
TRAV40A0A0B4J280 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
TRAV40A0A0B4J280 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV40A0A0B4J280 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC17.74■□□□□ 0.43
TRAV40A0A0B4J280 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC17.74■□□□□ 0.43
TRAV40A0A0B4J280 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV40A0A0B4J280 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
TRAV40A0A0B4J280 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV40A0A0B4J280 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC17.73■□□□□ 0.43
TRAV40A0A0B4J280 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV40A0A0B4J280 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV40A0A0B4J280 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC17.73■□□□□ 0.43
TRAV40A0A0B4J280 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV40A0A0B4J280 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV40A0A0B4J280 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV40A0A0B4J280 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV40A0A0B4J280 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV40A0A0B4J280 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV40A0A0B4J280 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC17.73■□□□□ 0.43
TRAV40A0A0B4J280 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
TRAV40A0A0B4J280 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV40A0A0B4J280 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV40A0A0B4J280 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV40A0A0B4J280 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC17.72■□□□□ 0.43
TRAV40A0A0B4J280 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV40A0A0B4J280 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
TRAV40A0A0B4J280 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV40A0A0B4J280 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC17.72■□□□□ 0.43
TRAV40A0A0B4J280 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC17.72■□□□□ 0.43
TRAV40A0A0B4J280 AC092437.1-201ENST00000624794 1048 ntBASIC17.72■□□□□ 0.43
TRAV40A0A0B4J280 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
TRAV40A0A0B4J280 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV40A0A0B4J280 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV40A0A0B4J280 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC17.72■□□□□ 0.43
TRAV40A0A0B4J280 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV40A0A0B4J280 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
TRAV40A0A0B4J280 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
TRAV40A0A0B4J280 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
TRAV40A0A0B4J280 LINC01960-201ENST00000563759 1884 ntBASIC17.71■□□□□ 0.43
TRAV40A0A0B4J280 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV40A0A0B4J280 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV40A0A0B4J280 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV40A0A0B4J280 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
TRAV40A0A0B4J280 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
TRAV40A0A0B4J280 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV40A0A0B4J280 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV40A0A0B4J280 AC004911.1-201ENST00000416316 871 ntBASIC17.71■□□□□ 0.43
TRAV40A0A0B4J280 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC17.71■□□□□ 0.43
TRAV40A0A0B4J280 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC17.71■□□□□ 0.43
TRAV40A0A0B4J280 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC17.71■□□□□ 0.43
TRAV40A0A0B4J280 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC17.71■□□□□ 0.43
TRAV40A0A0B4J280 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC17.71■□□□□ 0.43
TRAV40A0A0B4J280 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
TRAV40A0A0B4J280 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV40A0A0B4J280 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
TRAV40A0A0B4J280 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV40A0A0B4J280 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV40A0A0B4J280 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC17.7■□□□□ 0.42
TRAV40A0A0B4J280 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC17.7■□□□□ 0.42
TRAV40A0A0B4J280 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
TRAV40A0A0B4J280 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC17.7■□□□□ 0.42
TRAV40A0A0B4J280 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC17.7■□□□□ 0.42
TRAV40A0A0B4J280 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV40A0A0B4J280 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV40A0A0B4J280 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV40A0A0B4J280 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV40A0A0B4J280 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC17.7■□□□□ 0.42
TRAV40A0A0B4J280 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC17.7■□□□□ 0.42
TRAV40A0A0B4J280 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV40A0A0B4J280 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
TRAV40A0A0B4J280 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV40A0A0B4J280 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV40A0A0B4J280 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV40A0A0B4J280 COX20-201ENST00000366528 568 ntTSL 2 BASIC17.69■□□□□ 0.42
TRAV40A0A0B4J280 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV40A0A0B4J280 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV40A0A0B4J280 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC17.69■□□□□ 0.42
TRAV40A0A0B4J280 GALNS-213ENST00000569433 723 ntTSL 3 BASIC17.69■□□□□ 0.42
TRAV40A0A0B4J280 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC17.69■□□□□ 0.42
TRAV40A0A0B4J280 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC17.69■□□□□ 0.42
TRAV40A0A0B4J280 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV40A0A0B4J280 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV40A0A0B4J280 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV40A0A0B4J280 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC17.68■□□□□ 0.42
TRAV40A0A0B4J280 THRA-202ENST00000394121 2260 ntTSL 2 BASIC17.68■□□□□ 0.42
TRAV40A0A0B4J280 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
TRAV40A0A0B4J280 AC090192.1-201ENST00000517740 490 ntBASIC17.68■□□□□ 0.42
TRAV40A0A0B4J280 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
TRAV40A0A0B4J280 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV40A0A0B4J280 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC17.68■□□□□ 0.42
TRAV40A0A0B4J280 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms