Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SDC1P18827 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
SDC1P18827 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SDC1P18827 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC20.83■□□□□ 0.93
SDC1P18827 AC006455.2-201ENST00000429931 906 ntBASIC20.83■□□□□ 0.93
SDC1P18827 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
SDC1P18827 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.83■□□□□ 0.92
SDC1P18827 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.83■□□□□ 0.92
SDC1P18827 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
SDC1P18827 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
SDC1P18827 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SDC1P18827 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.82■□□□□ 0.92
SDC1P18827 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SDC1P18827 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.82■□□□□ 0.92
SDC1P18827 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
SDC1P18827 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SDC1P18827 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
SDC1P18827 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.81■□□□□ 0.92
SDC1P18827 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SDC1P18827 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SDC1P18827 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
SDC1P18827 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SDC1P18827 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SDC1P18827 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC20.81■□□□□ 0.92
SDC1P18827 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC20.81■□□□□ 0.92
SDC1P18827 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SDC1P18827 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
SDC1P18827 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SDC1P18827 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SDC1P18827 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.8■□□□□ 0.92
SDC1P18827 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SDC1P18827 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SDC1P18827 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC20.8■□□□□ 0.92
SDC1P18827 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
SDC1P18827 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
SDC1P18827 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SDC1P18827 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
SDC1P18827 AC133637.1-201ENST00000624115 1537 ntBASIC20.79■□□□□ 0.92
SDC1P18827 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.79■□□□□ 0.92
SDC1P18827 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC20.79■□□□□ 0.92
SDC1P18827 GRAMD4P7-201ENST00000578182 1232 ntBASIC20.79■□□□□ 0.92
SDC1P18827 MIR3621-201ENST00000580529 85 ntBASIC20.79■□□□□ 0.92
SDC1P18827 TRIR-205ENST00000592273 783 ntTSL 3 BASIC20.79■□□□□ 0.92
SDC1P18827 AL356740.2-201ENST00000601559 647 ntBASIC20.79■□□□□ 0.92
SDC1P18827 pRNA.6-201ENST00000610482 90 ntBASIC20.79■□□□□ 0.92
SDC1P18827 pRNA.5-201ENST00000612139 90 ntBASIC20.79■□□□□ 0.92
SDC1P18827 pRNA.11-201ENST00000618423 90 ntBASIC20.79■□□□□ 0.92
SDC1P18827 pRNA.13-201ENST00000619112 90 ntBASIC20.79■□□□□ 0.92
SDC1P18827 RASSF1-AS1-201ENST00000629828 790 ntBASIC20.79■□□□□ 0.92
SDC1P18827 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.79■□□□□ 0.92
SDC1P18827 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.79■□□□□ 0.92
SDC1P18827 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SDC1P18827 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
SDC1P18827 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SDC1P18827 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
SDC1P18827 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.78■□□□□ 0.92
SDC1P18827 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SDC1P18827 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SDC1P18827 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SDC1P18827 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.78■□□□□ 0.92
SDC1P18827 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
SDC1P18827 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC20.78■□□□□ 0.92
SDC1P18827 AC099791.2-201ENST00000605725 427 ntBASIC20.78■□□□□ 0.92
SDC1P18827 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC20.78■□□□□ 0.92
SDC1P18827 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SDC1P18827 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
SDC1P18827 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.78■□□□□ 0.92
SDC1P18827 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SDC1P18827 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
SDC1P18827 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.78■□□□□ 0.92
SDC1P18827 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.78■□□□□ 0.92
SDC1P18827 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
SDC1P18827 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SDC1P18827 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SDC1P18827 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.77■□□□□ 0.92
SDC1P18827 AC010542.4-201ENST00000563151 1910 ntBASIC20.77■□□□□ 0.92
SDC1P18827 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
SDC1P18827 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.77■□□□□ 0.92
SDC1P18827 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC20.77■□□□□ 0.92
SDC1P18827 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.77■□□□□ 0.92
SDC1P18827 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SDC1P18827 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SDC1P18827 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SDC1P18827 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
SDC1P18827 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SDC1P18827 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.77■□□□□ 0.92
SDC1P18827 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SDC1P18827 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SDC1P18827 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SDC1P18827 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
SDC1P18827 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SDC1P18827 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.76■□□□□ 0.91
SDC1P18827 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.76■□□□□ 0.91
SDC1P18827 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.76■□□□□ 0.91
SDC1P18827 AL031602.1-201ENST00000633169 911 ntBASIC20.76■□□□□ 0.91
SDC1P18827 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SDC1P18827 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SDC1P18827 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SDC1P18827 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.75■□□□□ 0.91
SDC1P18827 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms