Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
MMP28Q9H239 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
MMP28Q9H239 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MMP28Q9H239 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.22■□□□□ 0.67
MMP28Q9H239 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MMP28Q9H239 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC19.22■□□□□ 0.67
MMP28Q9H239 LONRF2P2-201ENST00000439212 571 ntBASIC19.22■□□□□ 0.67
MMP28Q9H239 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
MMP28Q9H239 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC19.22■□□□□ 0.67
MMP28Q9H239 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC19.22■□□□□ 0.67
MMP28Q9H239 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
MMP28Q9H239 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
MMP28Q9H239 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.22■□□□□ 0.67
MMP28Q9H239 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
MMP28Q9H239 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.22■□□□□ 0.67
MMP28Q9H239 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MMP28Q9H239 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MMP28Q9H239 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MMP28Q9H239 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC19.21■□□□□ 0.67
MMP28Q9H239 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
MMP28Q9H239 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC19.21■□□□□ 0.67
MMP28Q9H239 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
MMP28Q9H239 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC19.21■□□□□ 0.67
MMP28Q9H239 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.21■□□□□ 0.67
MMP28Q9H239 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.21■□□□□ 0.67
MMP28Q9H239 AC074183.2-201ENST00000623112 922 ntBASIC19.21■□□□□ 0.67
MMP28Q9H239 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MMP28Q9H239 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
MMP28Q9H239 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
MMP28Q9H239 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
MMP28Q9H239 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
MMP28Q9H239 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
MMP28Q9H239 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
MMP28Q9H239 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.2■□□□□ 0.66
MMP28Q9H239 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
MMP28Q9H239 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.2■□□□□ 0.66
MMP28Q9H239 AC007952.6-201ENST00000573168 2673 ntBASIC19.2■□□□□ 0.66
MMP28Q9H239 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
MMP28Q9H239 AC003957.1-201ENST00000625108 2673 ntBASIC19.2■□□□□ 0.66
MMP28Q9H239 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
MMP28Q9H239 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
MMP28Q9H239 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
MMP28Q9H239 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
MMP28Q9H239 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
MMP28Q9H239 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MMP28Q9H239 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
MMP28Q9H239 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MMP28Q9H239 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC19.19■□□□□ 0.66
MMP28Q9H239 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
MMP28Q9H239 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MMP28Q9H239 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MMP28Q9H239 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
MMP28Q9H239 MTX2-204ENST00000443241 799 ntTSL 3 BASIC19.19■□□□□ 0.66
MMP28Q9H239 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MMP28Q9H239 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
MMP28Q9H239 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC19.19■□□□□ 0.66
MMP28Q9H239 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
MMP28Q9H239 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC19.19■□□□□ 0.66
MMP28Q9H239 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MMP28Q9H239 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
MMP28Q9H239 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC19.19■□□□□ 0.66
MMP28Q9H239 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.18■□□□□ 0.66
MMP28Q9H239 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MMP28Q9H239 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MMP28Q9H239 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MMP28Q9H239 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
MMP28Q9H239 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
MMP28Q9H239 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MMP28Q9H239 AL592295.1-201ENST00000400984 884 ntBASIC19.18■□□□□ 0.66
MMP28Q9H239 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MMP28Q9H239 AC019171.1-201ENST00000601251 1056 ntBASIC19.18■□□□□ 0.66
MMP28Q9H239 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MMP28Q9H239 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MMP28Q9H239 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
MMP28Q9H239 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
MMP28Q9H239 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MMP28Q9H239 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MMP28Q9H239 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC19.17■□□□□ 0.66
MMP28Q9H239 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
MMP28Q9H239 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
MMP28Q9H239 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
MMP28Q9H239 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MMP28Q9H239 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MMP28Q9H239 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
MMP28Q9H239 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MMP28Q9H239 AL161729.1-201ENST00000604104 1402 ntBASIC19.17■□□□□ 0.66
MMP28Q9H239 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
MMP28Q9H239 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
MMP28Q9H239 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
MMP28Q9H239 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.16■□□□□ 0.66
MMP28Q9H239 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MMP28Q9H239 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MMP28Q9H239 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
MMP28Q9H239 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC19.16■□□□□ 0.66
MMP28Q9H239 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
MMP28Q9H239 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
MMP28Q9H239 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC19.16■□□□□ 0.66
MMP28Q9H239 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC19.16■□□□□ 0.66
MMP28Q9H239 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.16■□□□□ 0.66
MMP28Q9H239 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms