Protein–RNA interactions for Protein: S4R434

TMEM56-RWDD3, TMEM56-RWDD3 readthrough, humanhuman

Predictions only

Length 201 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM56-RWDD3S4R434 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TMEM56-RWDD3S4R434 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TMEM56-RWDD3S4R434 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC17.96■□□□□ 0.47
TMEM56-RWDD3S4R434 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
TMEM56-RWDD3S4R434 REST-206ENST00000612429 1376 ntTSL 5 BASIC17.96■□□□□ 0.47
TMEM56-RWDD3S4R434 REST-207ENST00000616975 1370 ntTSL 5 BASIC17.96■□□□□ 0.47
TMEM56-RWDD3S4R434 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TMEM56-RWDD3S4R434 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC17.96■□□□□ 0.47
TMEM56-RWDD3S4R434 KRT18P60-201ENST00000312876 1297 ntBASIC17.96■□□□□ 0.47
TMEM56-RWDD3S4R434 IDNK-201ENST00000376417 511 ntTSL 5 BASIC17.96■□□□□ 0.47
TMEM56-RWDD3S4R434 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TMEM56-RWDD3S4R434 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TMEM56-RWDD3S4R434 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TMEM56-RWDD3S4R434 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC17.96■□□□□ 0.47
TMEM56-RWDD3S4R434 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TMEM56-RWDD3S4R434 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
TMEM56-RWDD3S4R434 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
TMEM56-RWDD3S4R434 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
TMEM56-RWDD3S4R434 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TMEM56-RWDD3S4R434 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TMEM56-RWDD3S4R434 LINC01960-201ENST00000563759 1884 ntBASIC17.95■□□□□ 0.46
TMEM56-RWDD3S4R434 FP325331.1-202ENST00000623531 1380 ntBASIC17.95■□□□□ 0.46
TMEM56-RWDD3S4R434 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
TMEM56-RWDD3S4R434 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TMEM56-RWDD3S4R434 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC17.95■□□□□ 0.46
TMEM56-RWDD3S4R434 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
TMEM56-RWDD3S4R434 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TMEM56-RWDD3S4R434 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
TMEM56-RWDD3S4R434 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC17.95■□□□□ 0.46
TMEM56-RWDD3S4R434 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
TMEM56-RWDD3S4R434 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TMEM56-RWDD3S4R434 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TMEM56-RWDD3S4R434 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC17.95■□□□□ 0.46
TMEM56-RWDD3S4R434 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TMEM56-RWDD3S4R434 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
TMEM56-RWDD3S4R434 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC17.94■□□□□ 0.46
TMEM56-RWDD3S4R434 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC17.94■□□□□ 0.46
TMEM56-RWDD3S4R434 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TMEM56-RWDD3S4R434 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
TMEM56-RWDD3S4R434 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TMEM56-RWDD3S4R434 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TMEM56-RWDD3S4R434 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TMEM56-RWDD3S4R434 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TMEM56-RWDD3S4R434 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
TMEM56-RWDD3S4R434 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TMEM56-RWDD3S4R434 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC17.94■□□□□ 0.46
TMEM56-RWDD3S4R434 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
TMEM56-RWDD3S4R434 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC17.94■□□□□ 0.46
TMEM56-RWDD3S4R434 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TMEM56-RWDD3S4R434 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TMEM56-RWDD3S4R434 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
TMEM56-RWDD3S4R434 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TMEM56-RWDD3S4R434 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TMEM56-RWDD3S4R434 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
TMEM56-RWDD3S4R434 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TMEM56-RWDD3S4R434 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
TMEM56-RWDD3S4R434 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC17.93■□□□□ 0.46
TMEM56-RWDD3S4R434 AC244015.2-201ENST00000616358 1861 ntBASIC17.93■□□□□ 0.46
TMEM56-RWDD3S4R434 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TMEM56-RWDD3S4R434 RARRES2P2-201ENST00000394842 485 ntBASIC17.93■□□□□ 0.46
TMEM56-RWDD3S4R434 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
TMEM56-RWDD3S4R434 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TMEM56-RWDD3S4R434 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TMEM56-RWDD3S4R434 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC17.93■□□□□ 0.46
TMEM56-RWDD3S4R434 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
TMEM56-RWDD3S4R434 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TMEM56-RWDD3S4R434 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
TMEM56-RWDD3S4R434 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TMEM56-RWDD3S4R434 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC17.92■□□□□ 0.46
TMEM56-RWDD3S4R434 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TMEM56-RWDD3S4R434 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC17.92■□□□□ 0.46
TMEM56-RWDD3S4R434 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
TMEM56-RWDD3S4R434 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
TMEM56-RWDD3S4R434 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TMEM56-RWDD3S4R434 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TMEM56-RWDD3S4R434 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TMEM56-RWDD3S4R434 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC17.91■□□□□ 0.46
TMEM56-RWDD3S4R434 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TMEM56-RWDD3S4R434 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TMEM56-RWDD3S4R434 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC17.91■□□□□ 0.46
TMEM56-RWDD3S4R434 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
TMEM56-RWDD3S4R434 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TMEM56-RWDD3S4R434 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC17.91■□□□□ 0.46
TMEM56-RWDD3S4R434 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
TMEM56-RWDD3S4R434 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC17.91■□□□□ 0.46
TMEM56-RWDD3S4R434 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC17.91■□□□□ 0.46
TMEM56-RWDD3S4R434 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
TMEM56-RWDD3S4R434 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
TMEM56-RWDD3S4R434 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC17.91■□□□□ 0.46
TMEM56-RWDD3S4R434 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TMEM56-RWDD3S4R434 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
TMEM56-RWDD3S4R434 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC17.91■□□□□ 0.46
TMEM56-RWDD3S4R434 GOLGA2P6-201ENST00000340929 2049 ntBASIC17.91■□□□□ 0.46
TMEM56-RWDD3S4R434 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TMEM56-RWDD3S4R434 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
TMEM56-RWDD3S4R434 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC17.9■□□□□ 0.46
TMEM56-RWDD3S4R434 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TMEM56-RWDD3S4R434 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TMEM56-RWDD3S4R434 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TMEM56-RWDD3S4R434 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms