Protein–RNA interactions for Protein: A0A0A0MS06

TRBV23-1, T-cell receptor beta variable 23-1 (non-functional) (Fragment), humanhuman

Predictions only

Length 115 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRBV23-1A0A0A0MS06 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRBV23-1A0A0A0MS06 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TRBV23-1A0A0A0MS06 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TRBV23-1A0A0A0MS06 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
TRBV23-1A0A0A0MS06 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
TRBV23-1A0A0A0MS06 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TRBV23-1A0A0A0MS06 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC18.43■□□□□ 0.54
TRBV23-1A0A0A0MS06 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TRBV23-1A0A0A0MS06 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
TRBV23-1A0A0A0MS06 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRBV23-1A0A0A0MS06 SYT6-210ENST00000641643 1587 ntBASIC18.42■□□□□ 0.54
TRBV23-1A0A0A0MS06 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRBV23-1A0A0A0MS06 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
TRBV23-1A0A0A0MS06 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRBV23-1A0A0A0MS06 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRBV23-1A0A0A0MS06 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRBV23-1A0A0A0MS06 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRBV23-1A0A0A0MS06 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRBV23-1A0A0A0MS06 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRBV23-1A0A0A0MS06 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC18.42■□□□□ 0.54
TRBV23-1A0A0A0MS06 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
TRBV23-1A0A0A0MS06 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
TRBV23-1A0A0A0MS06 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRBV23-1A0A0A0MS06 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC18.42■□□□□ 0.54
TRBV23-1A0A0A0MS06 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC18.42■□□□□ 0.54
TRBV23-1A0A0A0MS06 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
TRBV23-1A0A0A0MS06 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
TRBV23-1A0A0A0MS06 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRBV23-1A0A0A0MS06 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRBV23-1A0A0A0MS06 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC18.42■□□□□ 0.54
TRBV23-1A0A0A0MS06 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC18.42■□□□□ 0.54
TRBV23-1A0A0A0MS06 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRBV23-1A0A0A0MS06 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
TRBV23-1A0A0A0MS06 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
TRBV23-1A0A0A0MS06 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRBV23-1A0A0A0MS06 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRBV23-1A0A0A0MS06 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
TRBV23-1A0A0A0MS06 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRBV23-1A0A0A0MS06 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC18.41■□□□□ 0.54
TRBV23-1A0A0A0MS06 AL353803.4-201ENST00000565882 1934 ntBASIC18.41■□□□□ 0.54
TRBV23-1A0A0A0MS06 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC18.41■□□□□ 0.54
TRBV23-1A0A0A0MS06 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC18.41■□□□□ 0.54
TRBV23-1A0A0A0MS06 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC18.41■□□□□ 0.54
TRBV23-1A0A0A0MS06 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC18.41■□□□□ 0.54
TRBV23-1A0A0A0MS06 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRBV23-1A0A0A0MS06 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
TRBV23-1A0A0A0MS06 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC18.41■□□□□ 0.54
TRBV23-1A0A0A0MS06 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC18.41■□□□□ 0.54
TRBV23-1A0A0A0MS06 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC18.41■□□□□ 0.54
TRBV23-1A0A0A0MS06 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC18.41■□□□□ 0.54
TRBV23-1A0A0A0MS06 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRBV23-1A0A0A0MS06 LINC00565-201ENST00000562710 2331 ntBASIC18.4■□□□□ 0.54
TRBV23-1A0A0A0MS06 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC18.4■□□□□ 0.54
TRBV23-1A0A0A0MS06 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRBV23-1A0A0A0MS06 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
TRBV23-1A0A0A0MS06 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
TRBV23-1A0A0A0MS06 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC18.4■□□□□ 0.54
TRBV23-1A0A0A0MS06 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRBV23-1A0A0A0MS06 AL499627.2-201ENST00000606283 725 ntBASIC18.4■□□□□ 0.54
TRBV23-1A0A0A0MS06 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
TRBV23-1A0A0A0MS06 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
TRBV23-1A0A0A0MS06 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRBV23-1A0A0A0MS06 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC18.39■□□□□ 0.54
TRBV23-1A0A0A0MS06 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
TRBV23-1A0A0A0MS06 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRBV23-1A0A0A0MS06 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
TRBV23-1A0A0A0MS06 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRBV23-1A0A0A0MS06 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRBV23-1A0A0A0MS06 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRBV23-1A0A0A0MS06 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC18.39■□□□□ 0.53
TRBV23-1A0A0A0MS06 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC18.39■□□□□ 0.53
TRBV23-1A0A0A0MS06 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC18.39■□□□□ 0.53
TRBV23-1A0A0A0MS06 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRBV23-1A0A0A0MS06 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRBV23-1A0A0A0MS06 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC18.39■□□□□ 0.53
TRBV23-1A0A0A0MS06 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC18.39■□□□□ 0.53
TRBV23-1A0A0A0MS06 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC18.39■□□□□ 0.53
TRBV23-1A0A0A0MS06 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRBV23-1A0A0A0MS06 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRBV23-1A0A0A0MS06 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC18.38■□□□□ 0.53
TRBV23-1A0A0A0MS06 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC18.38■□□□□ 0.53
TRBV23-1A0A0A0MS06 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRBV23-1A0A0A0MS06 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC18.38■□□□□ 0.53
TRBV23-1A0A0A0MS06 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRBV23-1A0A0A0MS06 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC18.38■□□□□ 0.53
TRBV23-1A0A0A0MS06 PTCHD3P2-201ENST00000424937 1205 ntBASIC18.38■□□□□ 0.53
TRBV23-1A0A0A0MS06 AC006455.2-201ENST00000429931 906 ntBASIC18.38■□□□□ 0.53
TRBV23-1A0A0A0MS06 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRBV23-1A0A0A0MS06 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC18.38■□□□□ 0.53
TRBV23-1A0A0A0MS06 pRNA.6-201ENST00000610482 90 ntBASIC18.38■□□□□ 0.53
TRBV23-1A0A0A0MS06 pRNA.5-201ENST00000612139 90 ntBASIC18.38■□□□□ 0.53
TRBV23-1A0A0A0MS06 AC011298.3-201ENST00000615796 283 ntBASIC18.38■□□□□ 0.53
TRBV23-1A0A0A0MS06 pRNA.11-201ENST00000618423 90 ntBASIC18.38■□□□□ 0.53
TRBV23-1A0A0A0MS06 pRNA.13-201ENST00000619112 90 ntBASIC18.38■□□□□ 0.53
TRBV23-1A0A0A0MS06 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC18.38■□□□□ 0.53
TRBV23-1A0A0A0MS06 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRBV23-1A0A0A0MS06 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRBV23-1A0A0A0MS06 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRBV23-1A0A0A0MS06 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRBV23-1A0A0A0MS06 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 90.7 ms