Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC20.08■□□□□ 0.81
DDX28Q9NUL7 KRT18P24-201ENST00000344739 1156 ntBASIC20.08■□□□□ 0.81
DDX28Q9NUL7 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC20.08■□□□□ 0.81
DDX28Q9NUL7 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC20.08■□□□□ 0.81
DDX28Q9NUL7 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC20.08■□□□□ 0.81
DDX28Q9NUL7 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.08■□□□□ 0.8
DDX28Q9NUL7 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC20.08■□□□□ 0.8
DDX28Q9NUL7 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
DDX28Q9NUL7 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
DDX28Q9NUL7 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
DDX28Q9NUL7 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
DDX28Q9NUL7 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
DDX28Q9NUL7 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
DDX28Q9NUL7 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
DDX28Q9NUL7 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
DDX28Q9NUL7 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
DDX28Q9NUL7 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
DDX28Q9NUL7 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
DDX28Q9NUL7 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
DDX28Q9NUL7 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.07■□□□□ 0.8
DDX28Q9NUL7 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC20.07■□□□□ 0.8
DDX28Q9NUL7 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
DDX28Q9NUL7 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC20.06■□□□□ 0.8
DDX28Q9NUL7 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
DDX28Q9NUL7 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
DDX28Q9NUL7 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
DDX28Q9NUL7 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
DDX28Q9NUL7 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
DDX28Q9NUL7 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
DDX28Q9NUL7 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC20.06■□□□□ 0.8
DDX28Q9NUL7 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC20.06■□□□□ 0.8
DDX28Q9NUL7 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC20.06■□□□□ 0.8
DDX28Q9NUL7 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC20.06■□□□□ 0.8
DDX28Q9NUL7 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
DDX28Q9NUL7 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
DDX28Q9NUL7 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
DDX28Q9NUL7 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
DDX28Q9NUL7 AC131274.2-201ENST00000580697 1507 ntBASIC20.06■□□□□ 0.8
DDX28Q9NUL7 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
DDX28Q9NUL7 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
DDX28Q9NUL7 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
DDX28Q9NUL7 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
DDX28Q9NUL7 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC20.05■□□□□ 0.8
DDX28Q9NUL7 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
DDX28Q9NUL7 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
DDX28Q9NUL7 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.05■□□□□ 0.8
DDX28Q9NUL7 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
DDX28Q9NUL7 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC20.05■□□□□ 0.8
DDX28Q9NUL7 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.05■□□□□ 0.8
DDX28Q9NUL7 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC20.05■□□□□ 0.8
DDX28Q9NUL7 MIR4508-201ENST00000584178 70 ntBASIC20.05■□□□□ 0.8
DDX28Q9NUL7 THA1P-201ENST00000590384 1145 ntBASIC20.05■□□□□ 0.8
DDX28Q9NUL7 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
DDX28Q9NUL7 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.05■□□□□ 0.8
DDX28Q9NUL7 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
DDX28Q9NUL7 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
DDX28Q9NUL7 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
DDX28Q9NUL7 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
DDX28Q9NUL7 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
DDX28Q9NUL7 AC138932.1-201ENST00000534164 6830 ntBASIC20.04■□□□□ 0.8
DDX28Q9NUL7 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
DDX28Q9NUL7 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
DDX28Q9NUL7 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
DDX28Q9NUL7 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
DDX28Q9NUL7 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC20.04■□□□□ 0.8
DDX28Q9NUL7 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC20.04■□□□□ 0.8
DDX28Q9NUL7 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
DDX28Q9NUL7 MIR4281-201ENST00000580852 62 ntBASIC20.04■□□□□ 0.8
DDX28Q9NUL7 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC20.04■□□□□ 0.8
DDX28Q9NUL7 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.04■□□□□ 0.8
DDX28Q9NUL7 EI24-213ENST00000618552 1747 ntTSL 5 BASIC20.04■□□□□ 0.8
DDX28Q9NUL7 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.04■□□□□ 0.8
DDX28Q9NUL7 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
DDX28Q9NUL7 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
DDX28Q9NUL7 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
DDX28Q9NUL7 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC20.04■□□□□ 0.8
DDX28Q9NUL7 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
DDX28Q9NUL7 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
DDX28Q9NUL7 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
DDX28Q9NUL7 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
DDX28Q9NUL7 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
DDX28Q9NUL7 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
DDX28Q9NUL7 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
DDX28Q9NUL7 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC20.03■□□□□ 0.8
DDX28Q9NUL7 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC20.03■□□□□ 0.8
DDX28Q9NUL7 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
DDX28Q9NUL7 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
DDX28Q9NUL7 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.02■□□□□ 0.8
DDX28Q9NUL7 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
DDX28Q9NUL7 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
DDX28Q9NUL7 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC20.02■□□□□ 0.8
DDX28Q9NUL7 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC20.02■□□□□ 0.8
DDX28Q9NUL7 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
DDX28Q9NUL7 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
DDX28Q9NUL7 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
DDX28Q9NUL7 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
DDX28Q9NUL7 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC20.02■□□□□ 0.79
DDX28Q9NUL7 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
DDX28Q9NUL7 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC20.02■□□□□ 0.79
DDX28Q9NUL7 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms